Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | BFL21_RS06090 | Genome accession | NZ_CP018243 |
| Coordinates | 1216947..1217576 (+) | Length | 209 a.a. |
| NCBI ID | WP_000839159.1 | Uniprot ID | A0AAV3HCB2 |
| Organism | Escherichia coli strain 350 | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1189134..1226748 | 1216947..1217576 | within | 0 |
Gene organization within MGE regions
Location: 1189134..1226748
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BFL21_RS05935 (BFL21_05885) | ssuD | 1189340..1190485 (-) | 1146 | WP_000055981.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
| BFL21_RS05940 (BFL21_05890) | ssuA | 1190482..1191441 (-) | 960 | WP_001244347.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| BFL21_RS05945 (BFL21_05895) | ssuE | 1191434..1192009 (-) | 576 | WP_001263919.1 | NADPH-dependent FMN reductase | - |
| BFL21_RS05955 (BFL21_05900) | elfA | 1192365..1192904 (+) | 540 | WP_000750295.1 | fimbrial protein | - |
| BFL21_RS05960 (BFL21_05905) | elfD | 1192987..1193688 (+) | 702 | WP_001303867.1 | molecular chaperone | - |
| BFL21_RS05970 (BFL21_05915) | elfC | 1193713..1196312 (+) | 2600 | Protein_1073 | fimbrial biogenesis usher protein | - |
| BFL21_RS05975 (BFL21_05920) | elfG | 1196303..1197373 (+) | 1071 | WP_001165679.1 | fimbrial protein | - |
| BFL21_RS05980 (BFL21_05925) | ycbU | 1197401..1197928 (+) | 528 | WP_077626202.1 | fimbrial protein | - |
| BFL21_RS05985 (BFL21_05930) | ycbV | 1197936..1198451 (+) | 516 | WP_000919493.1 | fimbrial protein | - |
| BFL21_RS05990 (BFL21_05935) | ycbF | 1198417..1199153 (+) | 737 | Protein_1077 | fimbrial chaperone | - |
| BFL21_RS05995 (BFL21_05940) | pyrD | 1199264..1200274 (+) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| BFL21_RS06000 (BFL21_05945) | zapC | 1200448..1200990 (+) | 543 | WP_001301917.1 | cell division protein ZapC | - |
| BFL21_RS06005 (BFL21_05950) | ycbX | 1200987..1202096 (-) | 1110 | WP_000224291.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| BFL21_RS06010 (BFL21_05955) | rlmKL | 1202340..1204448 (+) | 2109 | WP_001086511.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| BFL21_RS06015 (BFL21_05960) | uup | 1204460..1206367 (+) | 1908 | WP_000053083.1 | ABC transporter ATP-binding protein | - |
| BFL21_RS06020 (BFL21_05965) | pqiA | 1206497..1207750 (+) | 1254 | WP_000333170.1 | membrane integrity-associated transporter subunit PqiA | - |
| BFL21_RS06025 (BFL21_05970) | pqiB | 1207755..1209395 (+) | 1641 | WP_000445550.1 | intermembrane transport protein PqiB | - |
| BFL21_RS06030 (BFL21_05975) | pqiC | 1209392..1209955 (+) | 564 | WP_000759107.1 | membrane integrity-associated transporter subunit PqiC | - |
| BFL21_RS06055 (BFL21_05995) | rmf | 1211524..1211691 (+) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| BFL21_RS06060 (BFL21_06000) | fabA | 1211761..1212279 (-) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| BFL21_RS06065 (BFL21_06005) | ycbZ | 1212348..1214108 (-) | 1761 | WP_000156526.1 | Lon protease family protein | - |
| BFL21_RS06070 (BFL21_06010) | matP | 1214294..1214746 (+) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| BFL21_RS06075 (BFL21_06015) | ompA | 1214822..1215862 (-) | 1041 | WP_000750416.1 | porin OmpA | - |
| BFL21_RS06085 (BFL21_06025) | sulA | 1216219..1216728 (-) | 510 | WP_000288710.1 | SOS-induced cell division inhibitor SulA | - |
| BFL21_RS06090 (BFL21_06030) | sxy/tfoX | 1216947..1217576 (+) | 630 | WP_000839159.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| BFL21_RS06095 (BFL21_06035) | yccS | 1217539..1219701 (-) | 2163 | WP_000875023.1 | YccS family putative transporter | - |
| BFL21_RS06100 (BFL21_06040) | yccF | 1219711..1220157 (-) | 447 | WP_001261230.1 | YccF domain-containing protein | - |
| BFL21_RS06105 (BFL21_06045) | helD | 1220280..1222334 (+) | 2055 | WP_001301436.1 | DNA helicase IV | - |
| BFL21_RS06110 (BFL21_06050) | mgsA | 1222366..1222824 (-) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| BFL21_RS06115 (BFL21_06055) | yccT | 1222920..1223582 (-) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| BFL21_RS06125 (BFL21_06065) | yccU | 1223755..1224168 (+) | 414 | WP_000665217.1 | CoA-binding protein | - |
| BFL21_RS06130 (BFL21_06070) | hspQ | 1224213..1224530 (-) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| BFL21_RS06135 (BFL21_06075) | rlmI | 1224588..1225778 (-) | 1191 | WP_000116288.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| BFL21_RS06140 (BFL21_06080) | yccX | 1225873..1226151 (+) | 279 | WP_000048252.1 | acylphosphatase | - |
| BFL21_RS06145 (BFL21_06085) | tusE | 1226148..1226477 (-) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24173.05 Da Isoelectric Point: 9.1942
>NTDB_id=207484 BFL21_RS06090 WP_000839159.1 1216947..1217576(+) (sxy/tfoX) [Escherichia coli strain 350]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKYPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=207484 BFL21_RS06090 WP_000839159.1 1216947..1217576(+) (sxy/tfoX) [Escherichia coli strain 350]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAATATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
99.522 |
100 |
0.995 |