Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LJ046_RS01150 Genome accession   NZ_CP018218
Coordinates   201648..203450 (+) Length   600 a.a.
NCBI ID   WP_002879497.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 196648..208450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LJ046_RS01130 (LJ046_01125) - 197436..198980 (-) 1545 WP_002879493.1 ABC-F family ATP-binding cassette domain-containing protein -
  LJ046_RS01135 (LJ046_01130) - 198995..199372 (-) 378 WP_002879494.1 hypothetical protein -
  LJ046_RS01140 (LJ046_01135) - 199491..200630 (-) 1140 WP_035176740.1 LCP family protein -
  LJ046_RS09930 (LJ046_01140) - 201045..201371 (+) 327 Protein_184 RNA-guided endonuclease TnpB family protein -
  LJ046_RS01150 (LJ046_01145) pepF 201648..203450 (+) 1803 WP_002879497.1 oligoendopeptidase F Regulator
  LJ046_RS01155 (LJ046_01150) - 203520..204746 (-) 1227 WP_002879498.1 lactate oxidase -
  LJ046_RS01160 (LJ046_01155) - 204876..206414 (-) 1539 WP_035176742.1 L-lactate permease -
  LJ046_RS01165 (LJ046_01160) - 207295..208092 (-) 798 WP_002879501.1 metal ABC transporter permease -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 68275.09 Da        Isoelectric Point: 4.4594

>NTDB_id=207363 LJ046_RS01150 WP_002879497.1 201648..203450(+) (pepF) [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046]
MEIPYRSEVPKEQTWDLTRIFKTEADWEAAFKAVKQEVKALPALEDGFTESAAVLYDRLTQIFAVDRRLSKIYVYASMAS
DVDTSNQKKLALNSRAQSLAAEYQAAVAFIQPAVLALGKEGLDAFFKEEPRLENYRHYLEQIVKQEEHVLPAEEEKLVSA
AGDALSASANTFNVLTNSDLQFPYIEDEDGEAVELTEANYDILIQSQNREVREDAFDALYAVYGQFASTFASTLAGNVKA
HNFDAQTHHYQDALAAALSENNIPVDVYNQLLTSVHKHLDLLHRYVNLREEILDLKGDLQMWDMYVSITGKPSLSYTFAE
AKAQAREALQVLGEDYVKHVDYLFNNRCIDHVANMHKQSGAYSGGAYDTDAYELLNWQGDLDSLYTLVHETGHSVHSMYT
RENQPYVYGDYPIFVAEIASTTNENLLTNYFLDRVTDPKTRAFLLDYYLSSFKGTVYRQTQFAEFEKFIHESDQAGEALT
ADYLCGFYDRLNQQYYGPAISLGSDIALEWARIPHFYYNFYVYQYATGFAAATALANKITYGSQEDKEKYLDFLKSGSSD
YPINIMQKAGVDMTKSDYLEDAFKVFAERLDEFTDLIKKL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=207363 LJ046_RS01150 WP_002879497.1 201648..203450(+) (pepF) [Lactobacillus delbrueckii subsp. jakobsenii ZN7a-9 = DSM 26046]
ATGGAAATCCCTTATCGCAGTGAGGTTCCCAAAGAACAGACCTGGGACTTGACCCGGATCTTCAAGACTGAGGCGGACTG
GGAGGCCGCCTTTAAAGCTGTCAAGCAGGAAGTCAAGGCCCTGCCGGCCTTGGAAGACGGCTTTACGGAGAGCGCGGCCG
TCCTCTATGACCGCTTGACCCAGATTTTTGCCGTTGACCGCCGCCTGTCCAAGATCTACGTCTATGCCAGCATGGCCAGC
GACGTCGACACCAGCAACCAGAAGAAGCTGGCCCTCAATTCCCGCGCCCAGAGCCTGGCCGCTGAATACCAGGCGGCTGT
TGCCTTCATTCAGCCGGCTGTTTTAGCCTTGGGGAAAGAGGGCCTGGACGCCTTTTTCAAGGAAGAGCCAAGACTGGAAA
ACTACCGGCACTATTTGGAACAGATCGTCAAGCAGGAAGAGCACGTTTTGCCAGCTGAAGAGGAGAAGCTGGTATCGGCG
GCCGGGGATGCCCTGTCAGCTTCGGCCAACACCTTCAACGTCTTGACCAACTCCGATTTGCAATTCCCTTACATTGAAGA
TGAAGACGGGGAAGCAGTGGAACTGACGGAAGCCAACTACGACATCTTGATCCAGTCCCAGAACAGGGAAGTCAGAGAGG
ACGCCTTTGACGCCCTTTACGCTGTCTACGGCCAGTTCGCGTCAACTTTTGCCTCAACATTGGCCGGCAATGTCAAGGCC
CACAACTTTGATGCCCAGACCCACCACTACCAGGACGCCTTAGCCGCGGCTCTGTCAGAAAACAACATCCCTGTCGACGT
CTACAACCAGCTTTTGACTAGCGTCCACAAGCACCTGGACCTCCTCCACCGCTATGTCAACTTGCGCGAAGAGATCCTGG
ACCTGAAGGGCGACCTGCAAATGTGGGACATGTACGTGTCGATCACGGGCAAGCCAAGCCTCAGCTACACTTTCGCTGAA
GCCAAGGCCCAGGCCAGAGAGGCCCTGCAGGTTTTGGGCGAGGACTATGTCAAACACGTCGACTACCTCTTCAATAACCG
CTGCATCGACCACGTGGCTAACATGCACAAGCAAAGCGGAGCCTACTCCGGCGGGGCTTATGACACCGACGCCTATGAGC
TCTTGAACTGGCAGGGGGACCTGGATTCCCTCTACACCCTGGTCCACGAGACCGGCCACTCAGTCCACAGCATGTACACC
CGGGAAAACCAGCCATACGTGTACGGGGACTATCCGATCTTTGTCGCGGAAATTGCCTCAACGACCAATGAAAACCTGCT
GACCAACTACTTCCTGGATCGGGTAACGGATCCAAAGACCCGGGCCTTCCTGCTCGACTACTACTTGAGCTCCTTTAAGG
GAACGGTCTACCGGCAGACCCAGTTCGCGGAATTCGAGAAGTTCATTCATGAAAGCGACCAGGCGGGTGAAGCCTTGACG
GCTGACTACCTGTGCGGCTTCTACGACCGGCTCAACCAGCAGTACTACGGCCCGGCGATCAGCCTGGGCAGCGACATCGC
CCTGGAATGGGCCCGGATTCCTCACTTCTATTACAACTTCTACGTCTACCAATACGCGACCGGCTTTGCCGCGGCGACTG
CCCTGGCTAACAAGATTACTTACGGCAGCCAGGAAGACAAGGAGAAGTACCTGGACTTCCTTAAGTCCGGCTCCAGCGAC
TACCCGATCAACATCATGCAGAAGGCCGGCGTCGACATGACCAAGTCCGACTACCTGGAAGATGCCTTCAAGGTTTTTGC
GGAAAGACTGGACGAATTTACTGACTTAATCAAAAAATTGTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(115-182)

Peptidase family M3 (Peptidase_M3)

(203-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.832

99

0.493

Multiple sequence alignment