Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   COO52_RS06750 Genome accession   NZ_CP023448
Coordinates   1355459..1356202 (-) Length   247 a.a.
NCBI ID   WP_000660524.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPJP26     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1350459..1361202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  COO52_RS06730 gmd 1350724..1351869 (-) 1146 WP_096479310.1 GDP-mannose 4,6-dehydratase -
  COO52_RS06735 - 1351883..1353295 (-) 1413 WP_096479145.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  COO52_RS06740 comB10 1353365..1354501 (-) 1137 WP_096479146.1 DNA type IV secretion system protein ComB10 Machinery gene
  COO52_RS06745 comB9 1354494..1355459 (-) 966 WP_096479147.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  COO52_RS06750 comB8 1355459..1356202 (-) 744 WP_000660524.1 type IV secretion system protein Machinery gene
  COO52_RS06755 comB7 1356199..1356324 (-) 126 WP_001217874.1 hypothetical protein Machinery gene
  COO52_RS06760 comB6 1356340..1357395 (-) 1056 WP_096479148.1 P-type conjugative transfer protein TrbL Machinery gene
  COO52_RS06765 - 1357401..1358396 (-) 996 WP_096413487.1 PDZ domain-containing protein -
  COO52_RS06770 - 1358396..1358689 (-) 294 WP_000347917.1 YbaB/EbfC family nucleoid-associated protein -
  COO52_RS06775 panD 1358700..1359050 (-) 351 WP_096479149.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 28684.91 Da        Isoelectric Point: 8.9546

>NTDB_id=207286 COO52_RS06750 WP_000660524.1 1355459..1356202(-) (comB8) [Helicobacter pylori strain HPJP26]
MKEKPFNSEQLIYLEELLSHQEKHLENKLSGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAIVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
APTNRGD

Nucleotide


Download         Length: 744 bp        

>NTDB_id=207286 COO52_RS06750 WP_000660524.1 1355459..1356202(-) (comB8) [Helicobacter pylori strain HPJP26]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAATTGATCTATTTAGAAGAGCTTTTAAGCCACCAAGAAAAGCATTTAGAAAA
CAAGCTTTCTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGCTTGATGAGTTTTATCGCTCTTGTTTTAGCGATTGTTTTAATCAGTGTTCTACCCTTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCTATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTTATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAACCGCATTGACGATAAATCGCGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGATTTGATCAAAACGCAAAACAGCATTTAT
GCGCAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCAGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTTACTCGCTACAGCATCACTGAAATC
GCGCCGACTAATAGGGGCGATTGA

Domains

Predicted by InterProScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

97.166

100

0.972

Multiple sequence alignment