Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   Bateq7PJ16_RS20105 Genome accession   NZ_CP023409
Coordinates   3758644..3759777 (-) Length   377 a.a.
NCBI ID   WP_064671479.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753644..3764777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS20065 (Bateq7PJ16_4004) ywnA 3753805..3754206 (-) 402 WP_003227734.1 Rrf2 family transcriptional regulator -
  Bateq7PJ16_RS20070 (Bateq7PJ16_4005) ureC 3754341..3756050 (-) 1710 WP_003243090.1 urease subunit alpha -
  Bateq7PJ16_RS20075 (Bateq7PJ16_4006) ureB 3756047..3756421 (-) 375 WP_003227726.1 urease subunit beta -
  Bateq7PJ16_RS20080 (Bateq7PJ16_4007) ureA 3756418..3756735 (-) 318 WP_003227724.1 urease subunit gamma -
  Bateq7PJ16_RS20085 (Bateq7PJ16_4008) - 3756931..3757091 (-) 161 Protein_3937 hypothetical protein -
  Bateq7PJ16_RS22540 - 3757324..3757536 (-) 213 Protein_3938 urea ABC transporter substrate-binding protein -
  Bateq7PJ16_RS20095 (Bateq7PJ16_4009) csbD 3757749..3757937 (-) 189 WP_003227718.1 stress response protein CsbD -
  Bateq7PJ16_RS20100 (Bateq7PJ16_4010) - 3758010..3758489 (-) 480 WP_003244390.1 hypothetical protein -
  Bateq7PJ16_RS20105 (Bateq7PJ16_4011) rapC 3758644..3759777 (-) 1134 WP_064671479.1 response regulator aspartate phosphatase RapB Regulator
  Bateq7PJ16_RS20110 (Bateq7PJ16_4013) moaA 3759970..3760995 (-) 1026 WP_064671478.1 GTP 3',8-cyclase MoaA -
  Bateq7PJ16_RS20115 (Bateq7PJ16_4014) fdhD 3761011..3761799 (-) 789 WP_003227709.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  Bateq7PJ16_RS20120 (Bateq7PJ16_4015) - 3762032..3762193 (-) 162 WP_021480806.1 hypothetical protein -
  Bateq7PJ16_RS20125 (Bateq7PJ16_4016) ywmD 3762288..3762962 (-) 675 WP_003243553.1 VWA domain-containing protein -
  Bateq7PJ16_RS20130 (Bateq7PJ16_4017) - 3763015..3763155 (-) 141 WP_014478246.1 hypothetical protein -
  Bateq7PJ16_RS20135 (Bateq7PJ16_4018) ywmC 3763285..3763968 (-) 684 WP_003227700.1 VWA domain-containing protein -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 45083.22 Da        Isoelectric Point: 4.7975

>NTDB_id=207240 Bateq7PJ16_RS20105 WP_064671479.1 3758644..3759777(-) (rapC) [Bacillus subtilis strain 7PJ-16]
MAAYEIPSSQVGVKINKWYKHILAFQVADAVKLKEEIDLDIEQMEEDQLLLLYYQLISYRHQIMLDYVKPDLHEESQLQY
RELIKTLESNQDSISGLSEYYFHLFRGMYEFEQNNYISAISFYRKAEKMLAFVEDEIERAEFHFKVAEVFYIMKQTHFSM
NHAVQALETYKAHDFYRVRRIQCHFVISGNYIDYRNYEKALEHLDDAYRLALLEGQPRLIGSALYNIGNCYDDKGELDQA
AEYFEKALPVFEDYQLEQLPKALFSLTRVLFKKQDSQAAMRYYEKGIAIAQKRNDFFSLAKYKFLQALYVESVNLDMIQE
VFDYMEEKGLYVYIEEFALDAASYFSHREQYREAVYFYEKAVSMREMIQRNDCLYEV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=207240 Bateq7PJ16_RS20105 WP_064671479.1 3758644..3759777(-) (rapC) [Bacillus subtilis strain 7PJ-16]
ATGGCCGCGTACGAGATCCCGTCATCTCAAGTAGGAGTGAAAATCAATAAGTGGTATAAGCACATTTTAGCATTTCAAGT
GGCTGATGCCGTAAAGCTGAAGGAAGAAATTGATCTAGATATAGAACAGATGGAAGAGGATCAGCTGCTTCTCCTGTATT
ATCAGCTGATCAGCTACCGGCACCAAATTATGCTGGATTATGTAAAGCCTGACCTGCACGAGGAATCTCAGCTTCAATAT
CGTGAATTGATCAAAACGCTGGAAAGCAATCAGGACAGCATCTCCGGATTATCTGAGTATTATTTTCACTTGTTTAGAGG
AATGTACGAATTTGAACAGAACAATTACATCTCGGCTATATCCTTTTATCGGAAAGCTGAGAAGATGCTTGCGTTTGTAG
AAGATGAAATTGAAAGAGCGGAATTTCATTTTAAAGTGGCGGAAGTCTTTTATATTATGAAGCAGACGCACTTTTCCATG
AACCACGCCGTACAGGCGCTGGAGACGTATAAGGCTCACGATTTTTACAGAGTCAGAAGAATTCAATGCCATTTCGTCAT
ATCAGGAAACTACATTGACTACAGAAATTATGAAAAAGCGCTTGAACATTTAGATGACGCGTATCGCCTTGCTTTATTGG
AAGGACAGCCCCGTTTAATCGGATCAGCCCTTTATAACATTGGGAATTGCTATGATGACAAGGGGGAGCTGGATCAGGCC
GCCGAATACTTTGAAAAAGCGCTTCCTGTCTTCGAGGATTATCAGCTGGAACAGCTTCCAAAAGCGCTCTTCAGCCTGAC
TCGCGTTCTTTTCAAAAAACAAGATAGCCAAGCCGCGATGCGGTACTATGAAAAAGGGATTGCCATTGCCCAAAAACGAA
ACGACTTCTTCAGTCTGGCAAAATATAAATTTCTGCAGGCATTATATGTGGAATCTGTCAATTTGGATATGATTCAAGAA
GTATTTGATTATATGGAAGAAAAGGGCCTGTACGTATATATTGAAGAATTTGCTTTAGATGCTGCCTCCTATTTCAGTCA
TCGCGAACAATATAGAGAAGCGGTGTATTTTTATGAAAAAGCGGTCAGCATGAGAGAGATGATTCAAAGGAACGATTGCT
TATATGAAGTATGA

Domains

Predicted by InterProScan.

MalT-like TPR region (TPR_MalT)

(154-305)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

42.368

100

0.427
  rapF Bacillus subtilis subsp. subtilis str. 168

42.667

99.469

0.424

Multiple sequence alignment