Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   Bateq7PJ16_RS09495 Genome accession   NZ_CP023409
Coordinates   1824310..1824741 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain 7PJ-16     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1819310..1829741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS09475 (Bateq7PJ16_1873) spoVS 1819872..1820132 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  Bateq7PJ16_RS09480 (Bateq7PJ16_1874) tdh 1820397..1821440 (+) 1044 WP_128747111.1 L-threonine 3-dehydrogenase -
  Bateq7PJ16_RS09485 (Bateq7PJ16_1875) kbl 1821453..1822622 (+) 1170 WP_159376807.1 glycine C-acetyltransferase -
  Bateq7PJ16_RS09490 (Bateq7PJ16_1876) miaB 1822779..1824308 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  Bateq7PJ16_RS09495 (Bateq7PJ16_1877) ymcA 1824310..1824741 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  Bateq7PJ16_RS09500 (Bateq7PJ16_1878) cotE 1825002..1825547 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  Bateq7PJ16_RS09505 (Bateq7PJ16_1879) hexA 1825680..1828256 (+) 2577 WP_033883742.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=207176 Bateq7PJ16_RS09495 WP_003231834.1 1824310..1824741(+) (ymcA) [Bacillus subtilis strain 7PJ-16]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=207176 Bateq7PJ16_RS09495 WP_003231834.1 1824310..1824741(+) (ymcA) [Bacillus subtilis strain 7PJ-16]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATCTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATTGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCTAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1