Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   Bateq7PJ16_RS07120 Genome accession   NZ_CP023409
Coordinates   1365102..1366238 (+) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1360102..1371238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS07100 (Bateq7PJ16_1383) uxaA 1360559..1362052 (+) 1494 WP_159376775.1 altronate dehydratase family protein -
  Bateq7PJ16_RS07105 (Bateq7PJ16_1384) yjnA 1362091..1362855 (-) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  Bateq7PJ16_RS07110 (Bateq7PJ16_1385) bstD 1363074..1363538 (-) 465 WP_014479541.1 DinB family protein -
  Bateq7PJ16_RS07115 (Bateq7PJ16_1386) yjoB 1363687..1364958 (+) 1272 WP_003232739.1 ATPase YjoB -
  Bateq7PJ16_RS07120 (Bateq7PJ16_1387) rapC 1365102..1366238 (+) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  Bateq7PJ16_RS07125 (Bateq7PJ16_1388) phrA 1366228..1366362 (+) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  Bateq7PJ16_RS07130 (Bateq7PJ16_1389) yjpA 1366392..1366649 (-) 258 WP_003232731.1 YciI family protein -
  Bateq7PJ16_RS07135 (Bateq7PJ16_1390) xlyB 1366770..1367723 (+) 954 WP_159376776.1 N-acetylmuramoyl-L-alanine amidase -
  Bateq7PJ16_RS07140 (Bateq7PJ16_1391) yjqA 1367763..1368140 (-) 378 WP_014479546.1 PH domain-containing protein -
  Bateq7PJ16_RS07145 (Bateq7PJ16_1392) pghB 1368245..1368847 (+) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  Bateq7PJ16_RS07150 (Bateq7PJ16_1393) xpdC 1368924..1369760 (+) 837 WP_003245071.1 manganese catalase family protein -
  Bateq7PJ16_RS07155 (Bateq7PJ16_1394) xkdA 1369817..1370413 (-) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  Bateq7PJ16_RS07160 (Bateq7PJ16_1395) xre 1370576..1370917 (-) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=207156 Bateq7PJ16_RS07120 WP_015252291.1 1365102..1366238(+) (rapC) [Bacillus subtilis strain 7PJ-16]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=207156 Bateq7PJ16_RS07120 WP_015252291.1 1365102..1366238(+) (rapC) [Bacillus subtilis strain 7PJ-16]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCATCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTATTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTCGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATAGACACAGAATCAGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418