Detailed information NTG0207144

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: BSO20_RS13695
• Genome accession: NZ_CP018200
• Coordinates: 2823786..2824931 (-)
• Length: 381 a.a.
• NCBI ID: WP_074534220.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WS-8
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2818786..2829931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BSO20_RS13675 (BSO20_13685)	-	2819069..2819502 (+)	434	Protein_2647	hypothetical protein	-
BSO20_RS13680 (BSO20_13690)	-	2819527..2821599 (-)	2073	WP_032875881.1	transglycosylase domain-containing protein	-
BSO20_RS13685 (BSO20_13695)	speE	2821799..2822629 (+)	831	WP_003151052.1	spermidine synthase	-
BSO20_RS13690 (BSO20_13700)	speB	2822688..2823560 (+)	873	WP_032875884.1	agmatinase	-
BSO20_RS19675	-	2823683..2823802 (-)	120	WP_017418707.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
BSO20_RS13695 (BSO20_13705)	rapF	2823786..2824931 (-)	1146	WP_074534220.1	Rap family tetratricopeptide repeat protein	Regulator
BSO20_RS13705 (BSO20_13715)	-	2825162..2826517 (+)	1356	WP_032875887.1	YncE family protein	-
BSO20_RS13710 (BSO20_13720)	-	2826557..2827933 (+)	1377	WP_032875890.1	YncE family protein	-
BSO20_RS13715 (BSO20_13725)	-	2827940..2828452 (-)	513	Protein_2655	bacteriocin biosynthesis protein AlbG	-
BSO20_RS13720 (BSO20_13730)	-	2828606..2829034 (+)	429	WP_032869448.1	DUF1934 domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45737.21 Da
• Isoelectric Point: 5.0614

>NTDB_id=207144 BSO20_RS13695 WP_074534220.1 2823786..2824931(-) (rapF) [Bacillus amyloliquefaciens strain WS-8]
MASVLSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELAGLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAESKLTYVKDHIEKAEFYFKMSEVYYYMKQTYVS
MDYARQAYLIYKDAEKYNIRLTQCHSLFGANYLDVKQYDHAISHFQKAYTMAELEQQPQLMGRTLFNIALCHNNQNNKVE
AIPHLKEAIAVFEKAQMSHSLPQPYFLLTQIYFKLKNIDNAYDYHKKGISICKEIDDIIYEEKFKFLEYLYMPDPRDTLI
NDCLHFLENKLMYADIEELALDVAKYYYTQEEYKKASVYFLKVEEARQQIEGGVNLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=207144 BSO20_RS13695 WP_074534220.1 2823786..2824931(-) (rapF) [Bacillus amyloliquefaciens strain WS-8]
GTGGCGAGTGTTTTATCATCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATCAAAGAAGAACTTGCAGGTCTGGAAGATGATCAGGATCTTCATCTATACTATT
CTCTCATGGAATTCCGTCACAATCTGATGCTCGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGTCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAAAGCAAACTGACGTACG
TTAAAGATCATATAGAAAAAGCTGAATTTTACTTTAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTATCG
ATGGATTATGCGCGGCAGGCTTATTTAATTTATAAAGATGCAGAAAAATATAATATTAGATTAACCCAGTGCCATTCTTT
ATTTGGGGCTAATTATCTTGATGTAAAGCAATACGATCACGCGATTTCCCACTTTCAAAAGGCATATACGATGGCTGAAT
TGGAGCAGCAGCCGCAATTAATGGGGAGGACACTTTTTAACATCGCTTTATGCCATAATAATCAAAACAATAAAGTCGAG
GCTATTCCCCATTTAAAAGAAGCCATAGCTGTTTTTGAAAAAGCTCAAATGAGTCATTCACTTCCGCAGCCCTACTTCTT
ACTTACACAGATTTATTTTAAGTTAAAAAATATAGATAACGCGTACGATTATCATAAAAAAGGTATCTCAATATGTAAGG
AAATAGATGATATAATTTACGAGGAAAAATTTAAATTTTTAGAATACTTGTATATGCCGGATCCAAGAGATACATTAATA
AACGATTGTCTGCATTTTCTTGAAAATAAATTGATGTATGCTGATATTGAGGAATTAGCCCTTGATGTAGCTAAATATTA
TTACACACAAGAAGAATATAAAAAAGCTTCTGTCTACTTTTTAAAGGTTGAAGAAGCCAGACAGCAGATCGAAGGAGGAG
TGAATTTATATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (188-254)

• Tetratricopeptide repeat (TPR_8) (265-293)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	70.079	100	0.701
rapC	Bacillus subtilis subsp. subtilis str. 168	54.211	99.738	0.541