Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSO20_RS11690 Genome accession   NZ_CP018200
Coordinates   2431075..2431365 (+) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2426075..2436365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS11675 (BSO20_11685) - 2426296..2427621 (-) 1326 WP_087920785.1 G5 and 3D domain-containing protein -
  BSO20_RS11680 (BSO20_11690) - 2427756..2428523 (-) 768 WP_032872179.1 TatD family hydrolase -
  BSO20_RS11685 (BSO20_11695) metG 2428600..2430591 (-) 1992 WP_022552471.1 methionine--tRNA ligase -
  BSO20_RS11690 (BSO20_11700) abrB 2431075..2431365 (+) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  BSO20_RS11695 (BSO20_11705) rsmI 2431415..2432296 (-) 882 WP_032872176.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  BSO20_RS11700 (BSO20_11710) - 2432271..2432570 (-) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  BSO20_RS11705 (BSO20_11715) - 2432557..2433300 (-) 744 WP_004264717.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  BSO20_RS11710 (BSO20_11720) yabA 2433361..2433720 (-) 360 WP_004264720.1 replication initiation-control protein YabA -
  BSO20_RS11715 (BSO20_11725) ricT 2433735..2434562 (-) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  BSO20_RS11720 (BSO20_11730) holB 2434565..2435554 (-) 990 WP_032872173.1 DNA polymerase III subunit delta' -
  BSO20_RS11725 (BSO20_11735) - 2435566..2436006 (-) 441 WP_004264730.1 YaaR family protein -
  BSO20_RS11730 (BSO20_11740) darA 2436019..2436348 (-) 330 WP_004264734.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=207138 BSO20_RS11690 WP_169510469.1 2431075..2431365(+) (abrB) [Bacillus amyloliquefaciens strain WS-8]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=207138 BSO20_RS11690 WP_169510469.1 2431075..2431365(+) (abrB) [Bacillus amyloliquefaciens strain WS-8]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTAGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment