Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BSO20_RS10110 Genome accession   NZ_CP018200
Coordinates   2137902..2138300 (+) Length   132 a.a.
NCBI ID   WP_032872809.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2132902..2143300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS10090 (BSO20_10095) - 2135304..2135666 (-) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -
  BSO20_RS10095 (BSO20_10100) hxlA 2135898..2136533 (+) 636 WP_014416875.1 3-hexulose-6-phosphate synthase -
  BSO20_RS10100 (BSO20_10105) hxlB 2136530..2137087 (+) 558 WP_032872811.1 6-phospho-3-hexuloisomerase -
  BSO20_RS10105 (BSO20_10110) nucA/comI 2137444..2137881 (+) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BSO20_RS10110 (BSO20_10115) nin/comJ 2137902..2138300 (+) 399 WP_032872809.1 competence protein ComJ Regulator
  BSO20_RS10115 (BSO20_10120) - 2138341..2138559 (-) 219 Protein_1983 family 1 glycosylhydrolase -
  BSO20_RS20275 - 2138484..2138837 (-) 354 WP_079891133.1 family 1 glycosylhydrolase -
  BSO20_RS10125 (BSO20_10130) - 2138779..2139102 (-) 324 WP_032872805.1 YckD family protein -
  BSO20_RS10130 (BSO20_10135) - 2139175..2139609 (-) 435 WP_021494203.1 RDD family protein -
  BSO20_RS10135 (BSO20_10140) - 2139624..2140760 (-) 1137 WP_032872802.1 zinc-dependent alcohol dehydrogenase -
  BSO20_RS10140 (BSO20_10145) - 2140825..2142027 (-) 1203 WP_032872800.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15005.08 Da        Isoelectric Point: 4.9712

>NTDB_id=207134 BSO20_RS10110 WP_032872809.1 2137902..2138300(+) (nin/comJ) [Bacillus amyloliquefaciens strain WS-8]
MIKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAAVM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=207134 BSO20_RS10110 WP_032872809.1 2137902..2138300(+) (nin/comJ) [Bacillus amyloliquefaciens strain WS-8]
TTGATTAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTTCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCGTAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758

Multiple sequence alignment