Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   Bateq7PJ16_RS03330 Genome accession   NZ_CP023409
Coordinates   626745..627386 (+) Length   213 a.a.
NCBI ID   WP_014478974.1    Uniprot ID   -
Organism   Bacillus subtilis strain 7PJ-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 621745..632386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS03300 (Bateq7PJ16_0621) ydfE 622939..623562 (-) 624 WP_014478968.1 flavin reductase family protein -
  Bateq7PJ16_RS03305 (Bateq7PJ16_0622) ydfF 623652..624332 (+) 681 WP_015715305.1 winged helix-turn-helix domain-containing protein -
  Bateq7PJ16_RS03310 (Bateq7PJ16_0623) ydfG 624413..624856 (-) 444 WP_014478970.1 carboxymuconolactone decarboxylase family protein -
  Bateq7PJ16_RS03315 - 624942..625121 (-) 180 WP_010886421.1 hypothetical protein -
  Bateq7PJ16_RS03320 (Bateq7PJ16_0624) - 625118..625261 (-) 144 WP_014478971.1 hypothetical protein -
  Bateq7PJ16_RS03325 (Bateq7PJ16_0625) ydfH 625529..626752 (+) 1224 WP_159376664.1 two-component system sensor histidine kinase YdfH -
  Bateq7PJ16_RS03330 (Bateq7PJ16_0626) vraR 626745..627386 (+) 642 WP_014478974.1 two-component system response regulator YdfI Regulator
  Bateq7PJ16_RS03335 (Bateq7PJ16_0627) pleJ 627502..629676 (+) 2175 WP_069837277.1 MMPL family transporter -
  Bateq7PJ16_RS03340 (Bateq7PJ16_0628) cesA 630089..630991 (-) 903 WP_069837278.1 carboxylesterase -
  Bateq7PJ16_RS03345 (Bateq7PJ16_0629) ydfK 631194..631883 (-) 690 WP_033883509.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24004.93 Da        Isoelectric Point: 5.1938

>NTDB_id=207128 Bateq7PJ16_RS03330 WP_014478974.1 626745..627386(+) (vraR) [Bacillus subtilis strain 7PJ-16]
MNKVLIVDDHLVVREGLKLLIETNDQYTIIGEAENGKVAVRLADELEPDIILMDLYMPEMSGLEAIKQIKEKHDTPIIIL
TTYNEDHLMIEGIELGAKGYLLKDTSSETLFHTMDAAIRGNVLLQPDILKRLQEIQFERMKKQRSETQLTEKEVIVLKAI
AKGLKSKAIAFDLDVSERTVKSRLTSIYNKLGANSRTEAVTIAMQKGILTIDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=207128 Bateq7PJ16_RS03330 WP_014478974.1 626745..627386(+) (vraR) [Bacillus subtilis strain 7PJ-16]
ATGAATAAGGTTTTAATCGTTGATGACCATCTTGTCGTGAGGGAAGGTCTGAAGCTTTTAATTGAAACGAATGATCAATA
CACCATTATAGGAGAGGCGGAAAATGGAAAAGTCGCAGTCCGTCTTGCAGATGAATTAGAACCGGATATCATTCTGATGG
ATTTGTATATGCCGGAGATGAGCGGGTTAGAGGCCATTAAACAAATAAAAGAAAAACACGATACCCCCATCATTATTTTG
ACTACATATAATGAAGATCACTTAATGATCGAAGGGATTGAATTAGGAGCGAAAGGATATCTGTTAAAGGATACGAGTTC
AGAAACCCTTTTTCACACAATGGATGCAGCGATCAGAGGAAATGTGCTGTTGCAGCCTGATATCCTCAAACGTCTGCAAG
AAATCCAATTTGAGCGGATGAAAAAGCAGCGCAGTGAGACGCAGCTGACGGAAAAGGAAGTCATTGTTCTAAAAGCAATT
GCTAAAGGTCTTAAAAGCAAAGCGATTGCCTTTGATTTGGACGTCTCTGAGCGAACAGTAAAGTCCAGATTAACGTCCAT
TTACAATAAATTAGGCGCGAATTCAAGAACTGAGGCAGTAACGATTGCCATGCAAAAAGGTATTCTGACAATAGACAACT
AA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.264

99.531

0.371

Multiple sequence alignment