Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   Bateq7PJ16_RS02660 Genome accession   NZ_CP023409
Coordinates   510540..510974 (+) Length   144 a.a.
NCBI ID   WP_003246585.1    Uniprot ID   A0ABU0V5G7
Organism   Bacillus subtilis strain 7PJ-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 505540..515974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS02630 (Bateq7PJ16_0494) ydaD 506187..507047 (+) 861 WP_003234401.1 SDR family oxidoreductase -
  Bateq7PJ16_RS02635 (Bateq7PJ16_0495) lyxE 507063..507566 (+) 504 WP_003234400.1 D-lyxose ketol-isomerase -
  Bateq7PJ16_RS02640 (Bateq7PJ16_0496) ydaF 507654..508205 (+) 552 WP_159376655.1 GNAT family protein -
  Bateq7PJ16_RS02645 (Bateq7PJ16_0497) ydaG 508283..508705 (+) 423 WP_159376656.1 pyridoxamine 5'-phosphate oxidase family protein -
  Bateq7PJ16_RS02650 (Bateq7PJ16_0498) amj 509211..510020 (+) 810 WP_003234394.1 lipid II flippase Amj -
  Bateq7PJ16_RS02655 (Bateq7PJ16_0499) ydzA 510065..510355 (-) 291 WP_014475846.1 DUF3817 domain-containing protein -
  Bateq7PJ16_RS02660 (Bateq7PJ16_0500) lrpC 510540..510974 (+) 435 WP_003246585.1 transcriptional regulator LrpC Machinery gene
  Bateq7PJ16_RS02665 (Bateq7PJ16_0501) topB 511039..513222 (+) 2184 WP_129092929.1 DNA topoisomerase III -
  Bateq7PJ16_RS02670 (Bateq7PJ16_0502) ephJ 513424..514512 (+) 1089 WP_129092930.1 lipoprotein YdaJ -
  Bateq7PJ16_RS02675 (Bateq7PJ16_0503) epsK 514493..515344 (+) 852 WP_129092931.1 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16450.03 Da        Isoelectric Point: 7.7037

>NTDB_id=207127 Bateq7PJ16_RS02660 WP_003246585.1 510540..510974(+) (lrpC) [Bacillus subtilis strain 7PJ-16]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEDFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=207127 Bateq7PJ16_RS02660 WP_003246585.1 510540..510974(+) (lrpC) [Bacillus subtilis strain 7PJ-16]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTGACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATTAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTGGGGCTTCCCGTTTCCTGCATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGATTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment