Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BSO20_RS04880 Genome accession   NZ_CP018200
Coordinates   1119233..1119697 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain WS-8     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1114233..1124697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSO20_RS04855 (BSO20_04860) - 1114740..1115288 (-) 549 WP_032874729.1 hypothetical protein -
  BSO20_RS04860 (BSO20_04865) fadH 1115402..1116166 (-) 765 WP_032874727.1 2,4-dienoyl-CoA reductase -
  BSO20_RS04865 (BSO20_04870) - 1116310..1117173 (+) 864 WP_032874726.1 metallophosphoesterase -
  BSO20_RS04870 (BSO20_04875) - 1117248..1117742 (+) 495 WP_087920795.1 L,D-transpeptidase family protein -
  BSO20_RS04875 (BSO20_04880) - 1117818..1119110 (+) 1293 WP_007611093.1 MFS transporter -
  BSO20_RS04880 (BSO20_04885) kre 1119233..1119697 (+) 465 WP_003154622.1 YkyB family protein Regulator
  BSO20_RS04885 (BSO20_04890) cheV 1119740..1120651 (-) 912 WP_014417604.1 chemotaxis protein CheV -
  BSO20_RS19765 - 1120840..1121001 (+) 162 WP_007409608.1 hypothetical protein -
  BSO20_RS04895 (BSO20_04900) - 1121202..1122415 (+) 1214 Protein_972 aminotransferase A -
  BSO20_RS04900 (BSO20_04905) - 1122396..1124216 (-) 1821 WP_032874722.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=207112 BSO20_RS04880 WP_003154622.1 1119233..1119697(+) (kre) [Bacillus amyloliquefaciens strain WS-8]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=207112 BSO20_RS04880 WP_003154622.1 1119233..1119697(+) (kre) [Bacillus amyloliquefaciens strain WS-8]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAATGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment