Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   Bateq7PJ16_RS00340 Genome accession   NZ_CP023409
Coordinates   60658..60888 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain 7PJ-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55658..65888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Bateq7PJ16_RS00310 (Bateq7PJ16_0052) ridA 55822..56199 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  Bateq7PJ16_RS00315 (Bateq7PJ16_0053) spoVG 56394..56687 (+) 294 WP_003218346.1 septation regulator SpoVG -
  Bateq7PJ16_RS00320 (Bateq7PJ16_0055) glmU 56880..58250 (+) 1371 WP_017696375.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  Bateq7PJ16_RS00325 (Bateq7PJ16_0056) prsS 58273..59226 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  Bateq7PJ16_RS00330 (Bateq7PJ16_0057) rplYB 59311..59925 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  Bateq7PJ16_RS00335 (Bateq7PJ16_0058) pth 60032..60598 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  Bateq7PJ16_RS00340 (Bateq7PJ16_0059) subA/fin 60658..60888 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  Bateq7PJ16_RS00345 (Bateq7PJ16_0060) mfd 60958..64491 (+) 3534 WP_077671688.1 transcription-repair coupling factor -
  Bateq7PJ16_RS00350 (Bateq7PJ16_0061) spoVT 64627..65163 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=207110 Bateq7PJ16_RS00340 WP_003243417.1 60658..60888(+) (subA/fin) [Bacillus subtilis strain 7PJ-16]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=207110 Bateq7PJ16_RS00340 WP_003243417.1 60658..60888(+) (subA/fin) [Bacillus subtilis strain 7PJ-16]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment