Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   BK815_RS00590 Genome accession   NZ_CP018199
Coordinates   117380..118096 (-) Length   238 a.a.
NCBI ID   WP_073504069.1    Uniprot ID   A0A9Q6HQW9
Organism   Staphylococcus succinus strain 14BME20     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 112380..123096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BK815_RS00570 - 113440..113667 (+) 228 WP_046838128.1 sulfurtransferase TusA family protein -
  BK815_RS00575 - 113814..114776 (+) 963 WP_073504066.1 LacI family DNA-binding transcriptional regulator -
  BK815_RS00580 - 114875..116359 (+) 1485 WP_073504067.1 sucrose-6-phosphate hydrolase -
  BK815_RS00585 - 116356..117321 (+) 966 WP_073504068.1 carbohydrate kinase family protein -
  BK815_RS00590 agrA 117380..118096 (-) 717 WP_073504069.1 quorum-sensing response regulator AgrA Regulator
  BK815_RS00595 agrC 118109..119404 (-) 1296 WP_073504070.1 quorum-sensing sensor histidine kinase AgrC -
  BK815_RS00600 agrD 119429..119566 (-) 138 WP_073504071.1 cyclic lactone autoinducer peptide AgrD -
  BK815_RS00605 - 119563..120138 (-) 576 WP_073504072.1 accessory gene regulator AgrB -
  BK815_RS00610 - 121117..121902 (-) 786 WP_073504073.1 carbon-nitrogen family hydrolase -
  BK815_RS00615 - 122090..122719 (-) 630 WP_073504074.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27988.75 Da        Isoelectric Point: 5.2145

>NTDB_id=207063 BK815_RS00590 WP_073504069.1 117380..118096(-) (agrA) [Staphylococcus succinus strain 14BME20]
MKIFICEDDTRQRENMISIINNYIMIEEKPMQIEVATDDPYEILERSKNTSDIGCYFLDIQLNSDINGIKLASEIRKYDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPDELKSRIIDCLNTSESRLKLLSKESNVETIELKRGSNSVYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELDQLDDRFFRCHNSFVINRHNIESIDSKSRIVYFKNNEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=207063 BK815_RS00590 WP_073504069.1 117380..118096(-) (agrA) [Staphylococcus succinus strain 14BME20]
ATGAAAATATTCATATGTGAAGATGATACAAGACAACGTGAAAATATGATATCAATCATCAACAACTACATCATGATTGA
AGAGAAACCCATGCAAATTGAAGTTGCAACTGATGATCCTTATGAAATACTAGAACGTTCAAAAAACACGAGTGACATTG
GATGTTACTTCTTAGATATTCAATTAAACTCTGATATTAATGGCATTAAACTCGCAAGTGAAATTCGTAAATATGATCCT
GTCGGTAATATTATTTTTGTTACAAGTCATAGTGAACTTACCTATCTCACTTTCGTGTATAAAGTGGCCGCTATGGACTT
CATCTTCAAAGATGACCCTGACGAATTAAAATCAAGAATTATTGATTGTCTTAATACCTCTGAATCTAGATTAAAACTAC
TTTCCAAAGAATCTAATGTGGAAACGATTGAATTAAAACGTGGCAGTAATTCTGTCTATGTTCAATATGATGATGTTATG
TTTTTCGAATCCTCTACTAAATCACATAGATTAATTGCTCATTTAGATAATCGTCAAATCGAATTTTACGGCAATCTTAA
AGAGCTGGATCAACTTGATGATAGATTCTTCCGATGTCATAATAGTTTTGTTATAAATCGACACAACATAGAATCTATAG
ATTCTAAATCACGTATTGTTTACTTTAAAAACAACGAACACTGCTATGCTTCAGTGAGAAACGTCAAGAAAATATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

85.714

100

0.857

Multiple sequence alignment