Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BSL056_RS12125 Genome accession   NZ_CP018197
Coordinates   2356906..2357241 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain KCTC 12796BP     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2351906..2362241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS12105 (BSL056_12135) gcvT 2352385..2353482 (-) 1098 WP_073206266.1 glycine cleavage system aminomethyltransferase GcvT -
  BSL056_RS12110 (BSL056_12140) - 2354044..2355714 (+) 1671 WP_024427994.1 SNF2-related protein -
  BSL056_RS12115 (BSL056_12145) - 2355729..2356526 (+) 798 WP_024427993.1 YqhG family protein -
  BSL056_RS12120 (BSL056_12150) - 2356708..2356872 (+) 165 WP_073206269.1 anti-repressor SinI family protein -
  BSL056_RS12125 (BSL056_12155) sinR 2356906..2357241 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  BSL056_RS12130 (BSL056_12160) - 2357309..2358109 (-) 801 WP_024422970.1 TasA family protein -
  BSL056_RS12135 (BSL056_12165) - 2358164..2358736 (-) 573 WP_024422971.1 signal peptidase I -
  BSL056_RS12140 (BSL056_12170) tapA 2358789..2359316 (-) 528 WP_073206271.1 amyloid fiber anchoring/assembly protein TapA -
  BSL056_RS12145 (BSL056_12175) - 2359616..2359894 (+) 279 WP_171464609.1 DUF3889 domain-containing protein -
  BSL056_RS12150 (BSL056_12180) - 2359929..2360123 (-) 195 WP_024422974.1 YqzE family protein -
  BSL056_RS12155 (BSL056_12185) comGG 2360183..2360566 (-) 384 WP_073206276.1 competence type IV pilus minor pilin ComGG -
  BSL056_RS12160 (BSL056_12190) comGF 2360563..2361090 (-) 528 WP_240503390.1 competence type IV pilus minor pilin ComGF -
  BSL056_RS21220 (BSL056_12195) comGE 2361002..2361316 (-) 315 WP_073206282.1 competence type IV pilus minor pilin ComGE -
  BSL056_RS12170 (BSL056_12200) comGD 2361300..2361746 (-) 447 WP_073206286.1 competence type IV pilus minor pilin ComGD -
  BSL056_RS12175 (BSL056_12205) comGC 2361739..2362032 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=207034 BSL056_RS12125 WP_024422969.1 2356906..2357241(+) (sinR) [Bacillus safensis strain KCTC 12796BP]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=207034 BSL056_RS12125 WP_024422969.1 2356906..2357241(+) (sinR) [Bacillus safensis strain KCTC 12796BP]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment