Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   BSL056_RS06560 Genome accession   NZ_CP018197
Coordinates   1318952..1321054 (-) Length   700 a.a.
NCBI ID   WP_073204956.1    Uniprot ID   -
Organism   Bacillus safensis strain KCTC 12796BP     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1313952..1326054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSL056_RS06535 (BSL056_06560) - 1314369..1314611 (+) 243 WP_024424676.1 aspartyl-phosphate phosphatase Spo0E family protein -
  BSL056_RS06540 (BSL056_06565) - 1314658..1316163 (-) 1506 WP_024424677.1 ATP-binding protein -
  BSL056_RS06545 (BSL056_06570) - 1316368..1316823 (+) 456 WP_024424678.1 MarR family transcriptional regulator -
  BSL056_RS06550 (BSL056_06575) motB 1317016..1317786 (-) 771 WP_024424679.1 flagellar motor protein MotB -
  BSL056_RS06555 (BSL056_06580) motA 1317779..1318573 (-) 795 WP_024424680.1 flagellar motor stator protein MotA -
  BSL056_RS06560 (BSL056_06585) clpC 1318952..1321054 (-) 2103 WP_073204956.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  BSL056_RS06565 (BSL056_06590) - 1321299..1322342 (+) 1044 WP_073204958.1 hypothetical protein -
  BSL056_RS06570 (BSL056_06595) queC 1322617..1323273 (+) 657 WP_024424683.1 7-cyano-7-deazaguanine synthase QueC -
  BSL056_RS06575 (BSL056_06600) queD 1323274..1323714 (+) 441 WP_073204961.1 6-carboxytetrahydropterin synthase QueD -
  BSL056_RS06580 (BSL056_06605) queE 1323707..1324438 (+) 732 WP_056766298.1 7-carboxy-7-deazaguanine synthase QueE -
  BSL056_RS06585 (BSL056_06610) queF 1324454..1324951 (+) 498 WP_024426839.1 preQ(1) synthase -
  BSL056_RS06590 (BSL056_06615) - 1325213..1325431 (+) 219 WP_024424687.1 hypothetical protein -
  BSL056_RS06595 (BSL056_06620) - 1325555..1325743 (-) 189 WP_003211747.1 DUF2187 family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77938.53 Da        Isoelectric Point: 4.9961

>NTDB_id=207023 BSL056_RS06560 WP_073204956.1 1318952..1321054(-) (clpC) [Bacillus safensis strain KCTC 12796BP]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSQAAGHAPNMEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGVRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIDILKGIQDKYEAYHGVTYSDEAIKACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLAEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTTEKEHIVTAEDIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVDKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGTADKTVKVGFQSDQEEAFEEQSLIDSLSSYFKPEFLNRFDSIIQFDSLDKEDLVKIVDLLLNELSEQLKEQNLTVHVT
NEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEQLSGFTVDVEHDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=207023 BSL056_RS06560 WP_073204956.1 1318952..1321054(-) (clpC) [Bacillus safensis strain KCTC 12796BP]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTAAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTATACCTCTTTGATGGAGCAGTCAAAAATGAAAATGGGACCGCAACTCTTTGGAGGAAGTTCAT
TCTTCTCTCAGGCAGCAGGTCATGCCCCAAACATGGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAGCTTGGCCGTAAC
TTAACAGATGGAGCAAATGCTGGTTTAATTGATCCAGTCATTGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAGATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTTATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCAGAAGGACTCGCGC
TCAAAATTGCGAGCGGCGATGTGCCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTTTCTTCACTTGTCGCA
AACACAGGTGTACGCGGTCAATTTGAGGAAAGAATGAAGCAGTTAATCAAAGAACTGCAAAGCCGTAAAAATATCATCTT
ATTTGTAGATGAAATCCATCTTCTTGTGGGCGCAGGATCTGCAGAAGGATCAATGGATGCTGGAAACATTTTAAAACCAG
CCCTTGCAAGAGGTGAACTGCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGCCAAATTGAAAAAGATGCTGCACTC
GAACGGCGCTTCCAGCCCGTCATCGTAGATGAGCCAACACAAGATGAAGCGATCGACATCTTAAAAGGCATTCAAGATAA
ATACGAGGCTTATCATGGTGTCACCTATTCAGATGAAGCAATCAAAGCGTGTGTTCAATTATCTTCGCGGTATATTCAAG
ACCGCCATTTACCGGATAAAGCCATTGATTTAATGGATGAAGCTGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAGCTGACAAATCGATTAGCGGAAATTGCCGCAGAAAAACAAGCTGCGCTAAAAGAAGAACAATATGAAAAAGC
AGCGAAGCTTCGCGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAACTGAAAAAGAGCATATCGTTACAG
CAGAGGACATTCAGGCCATTGTGGAACAAAAAACAGGCATTCCTGTCGGGAAACTCCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGTCTAAAAGCACGAGTGATTGGGCAGGAGCATGCGGTTGATAAAGTGGCCAAAGCTGTGAAAAG
AAGCAGAGCTGGATTAAAATCGAAACATAGACCAACAGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCTAAAACGTTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATTCGTTTAGATATGAGTGAGTACATGGAA
AAACACTCTGTGTCCAAACTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCTGGCCAGCTGACTGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACACCCAGATGTACAGCACATGTTCCTGCAAA
TCATGGAAGACGGCCGCTTAACAGACAGCCAAGGCAGAACGGTCAGCTTTAAAGATACAGTCATCATCATGACAAGTAAC
GCAGGCACCGCAGATAAAACAGTCAAAGTGGGCTTCCAATCTGATCAGGAAGAGGCGTTTGAGGAACAATCACTCATTGA
TTCACTGAGCAGCTACTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAATTTGATTCACTAGACAAAGAGG
ACTTAGTGAAGATTGTTGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAGAATTTAACAGTTCATGTCACA
AATGAAGCAAAAGAAAAGATCGCAGAGCTTGGATATCATCCTGCATTTGGTGCTCGTCCACTTCGAAGAACCATCCAAGA
GCACGTTGAAGACCAAATGACGGAGATCCTGCTTGAAGAGGAGCAGCTTTCTGGATTTACTGTGGATGTTGAACATGACG
AAATCGTCGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-687)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)

AAA lid domain (AAA_lid_9)

(253-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

57.317

100

0.604
  clpE Streptococcus mutans UA159

56.604

100

0.6
  clpE Streptococcus pneumoniae Rx1

55.801

100

0.577
  clpE Streptococcus pneumoniae D39

55.801

100

0.577
  clpE Streptococcus pneumoniae R6

55.801

100

0.577
  clpE Streptococcus pneumoniae TIGR4

55.801

100

0.577
  clpC Bacillus subtilis subsp. subtilis str. 168

54.03

95.714

0.517
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.086

93.143

0.439
  clpC Streptococcus thermophilus LMD-9

46.285

92.286

0.427
  clpC Streptococcus thermophilus LMG 18311

46.13

92.286

0.426
  clpC Streptococcus mutans UA159

44.172

93.143

0.411
  clpC Streptococcus pneumoniae TIGR4

45.064

89.714

0.404
  clpC Streptococcus pneumoniae Rx1

45.265

89

0.403
  clpC Streptococcus pneumoniae D39

45.265

89

0.403

Multiple sequence alignment