Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AYT26_RS05435 Genome accession   NC_002570
Coordinates   1103963..1104916 (+) Length   317 a.a.
NCBI ID   WP_010897195.1    Uniprot ID   Q9KE33
Organism   Halalkalibacterium halodurans C-125     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1098963..1109916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS05410 (BH1019) - 1099269..1099943 (-) 675 WP_010897189.1 B3/4 domain-containing protein -
  AYT26_RS05415 (BH1020) queG 1100040..1101215 (+) 1176 WP_010897190.1 tRNA epoxyqueuosine(34) reductase QueG -
  AYT26_RS05420 (BH1021) - 1101249..1101776 (+) 528 WP_010897191.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  AYT26_RS05425 (BH1022) - 1102095..1102991 (+) 897 WP_010897192.1 amidase domain-containing protein -
  AYT26_RS05430 (BH1023) trmL 1103057..1103530 (+) 474 WP_010897193.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  AYT26_RS05435 (BH1025) ceuB 1103963..1104916 (+) 954 WP_010897195.1 ABC transporter permease Machinery gene
  AYT26_RS05440 (BH1026) - 1104906..1105853 (+) 948 WP_010897196.1 iron chelate uptake ABC transporter family permease subunit -
  AYT26_RS05445 (BH1027) - 1105847..1106605 (+) 759 WP_010897197.1 ABC transporter ATP-binding protein -
  AYT26_RS05450 (BH1028) - 1106637..1107626 (+) 990 WP_010897198.1 siderophore ABC transporter substrate-binding protein -
  AYT26_RS05455 (BH1029) - 1107785..1109680 (+) 1896 WP_010897199.1 PrkA family serine protein kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35085.58 Da        Isoelectric Point: 10.0724

>NTDB_id=20696 AYT26_RS05435 WP_010897195.1 1103963..1104916(+) (ceuB) [Halalkalibacterium halodurans C-125]
MKKRYLLPVLLLSSICSLFIGVSEVTLSGLLRMDGGQWQILFTSRLPRLMSILIAGIGMSVCGLIMQQLTRNRFVSPTTA
GTLDSARLGILVSMILFTSAGPIEKIFVAFLFALAGTFIFMMLLERIKFKDPIFIPLVGLMFGSIISSITTFFAYRYDLI
QNMSAWLQGNFALMIKGQYELLYISIPVLILAYVFANRFTVAGMGEEFAVNLGLKYKQVVNIGLVIVALVTSVVVLTVGM
IPFLGLIIPNIVSIYKGDNLRKNLPYTALLGALFVLLCDIIGRVIIYPYEIAIGLTVGVIGSAIFLYMLLRRHKYGF

Nucleotide


Download         Length: 954 bp        

>NTDB_id=20696 AYT26_RS05435 WP_010897195.1 1103963..1104916(+) (ceuB) [Halalkalibacterium halodurans C-125]
ATGAAGAAACGTTATCTCTTGCCTGTATTACTTCTTTCCTCCATCTGTTCGTTGTTTATCGGTGTGAGTGAAGTCACGCT
TTCAGGCCTGCTACGAATGGATGGGGGGCAATGGCAAATTCTTTTCACAAGCAGACTACCACGGTTGATGAGCATTTTAA
TTGCCGGCATCGGCATGAGCGTTTGCGGTTTGATCATGCAGCAGCTTACACGTAATCGGTTTGTTTCACCAACAACAGCG
GGAACGCTTGATTCTGCTCGCCTAGGCATCTTAGTTTCGATGATCCTGTTTACTTCAGCAGGACCGATCGAGAAAATTTT
TGTCGCTTTTTTATTTGCCTTAGCTGGGACGTTCATTTTTATGATGTTACTTGAGCGAATTAAGTTTAAGGACCCGATTT
TTATTCCCCTCGTGGGACTCATGTTTGGAAGCATCATTAGCTCAATCACGACTTTCTTTGCATATCGCTATGATCTAATA
CAGAACATGTCAGCATGGCTGCAAGGAAATTTCGCCTTAATGATCAAGGGACAATATGAACTGTTATACATAAGTATCCC
CGTACTCATTCTAGCTTATGTGTTTGCCAATCGTTTCACTGTGGCAGGAATGGGAGAAGAGTTCGCTGTCAACTTAGGCT
TAAAATATAAGCAAGTAGTGAATATCGGTCTGGTCATTGTAGCTTTAGTTACATCTGTCGTCGTGTTGACTGTAGGAATG
ATTCCCTTTCTCGGGTTAATCATTCCAAATATTGTATCGATCTACAAAGGGGATAATTTGCGAAAAAATCTTCCATATAC
CGCCCTGTTAGGCGCATTGTTTGTTCTTTTGTGCGATATTATCGGTCGGGTCATTATTTATCCTTATGAAATAGCGATTG
GGCTGACGGTTGGTGTGATCGGAAGTGCGATTTTCCTATACATGCTGTTAAGGAGACATAAATATGGGTTTTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KE33

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.674

98.738

0.53

Multiple sequence alignment