Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   BSR20_RS10305 Genome accession   NZ_CP018189
Coordinates   2192168..2192935 (+) Length   255 a.a.
NCBI ID   WP_013991348.1    Uniprot ID   A0AB33ZDS6
Organism   Streptococcus salivarius strain ICDC3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2187168..2197935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS10290 (BSR20_10400) - 2189483..2190166 (-) 684 WP_013991345.1 YoaK family protein -
  BSR20_RS10295 (BSR20_10405) rlmH 2190182..2190661 (-) 480 WP_014632473.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  BSR20_RS10300 (BSR20_10410) htrA 2190867..2192102 (+) 1236 WP_013991347.1 S1C family serine protease Regulator
  BSR20_RS10305 (BSR20_10415) spo0J 2192168..2192935 (+) 768 WP_013991348.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29363.86 Da        Isoelectric Point: 9.5843

>NTDB_id=206953 BSR20_RS10305 WP_013991348.1 2192168..2192935(+) (spo0J) [Streptococcus salivarius strain ICDC3]
MQEQLKALPISDIYPNPFQPRIEFSDEELAELSQSIAENGLIQPIIVRKSDIIGYELIAGERRLRACKRLGMTEIPAVVK
EVTDQESRKQAIIENLQRSNLNPIEEAKAYRSLINELAYSHEELAKAMGKSRPYISNALRLLQLPKEIQTSIENGKLSQG
HARALLAVEDTKKQLTIYHQVLTEKWSVRTLEKRLQELPKKQKSKKDIHIKDKEKELEKSLGLPVTLRYHKNHSGTIQIH
FSTEEDFNRIINKLI

Nucleotide


Download         Length: 768 bp        

>NTDB_id=206953 BSR20_RS10305 WP_013991348.1 2192168..2192935(+) (spo0J) [Streptococcus salivarius strain ICDC3]
ATGCAAGAACAACTCAAAGCTTTACCTATTAGTGACATCTATCCCAATCCTTTTCAACCTCGTATAGAGTTCTCTGATGA
AGAATTAGCGGAGCTAAGCCAATCGATTGCAGAAAATGGACTAATACAGCCAATCATTGTCCGAAAATCGGATATTATTG
GTTATGAACTAATTGCTGGGGAAAGACGTTTACGTGCCTGTAAACGTCTAGGAATGACAGAAATCCCTGCAGTTGTAAAG
GAAGTTACAGATCAAGAGAGTCGTAAACAAGCTATTATTGAAAATTTACAACGATCGAATCTCAATCCCATTGAAGAAGC
AAAGGCCTATCGTAGTTTAATTAATGAGCTAGCTTATAGTCACGAGGAACTGGCGAAAGCTATGGGGAAATCCAGACCCT
ATATCAGTAACGCTCTTAGACTCCTCCAACTTCCCAAAGAGATACAGACAAGTATCGAAAATGGCAAACTGAGTCAAGGA
CATGCTAGAGCACTTTTAGCTGTTGAGGATACAAAAAAGCAACTAACTATCTATCATCAGGTCCTTACTGAAAAATGGTC
TGTTCGTACCCTGGAAAAAAGACTTCAAGAACTTCCAAAAAAACAAAAATCAAAAAAAGATATTCATATAAAAGATAAAG
AAAAAGAACTTGAAAAATCACTTGGTCTCCCCGTTACTCTTCGTTATCACAAAAATCACTCTGGAACTATTCAGATCCAC
TTTTCGACAGAAGAAGATTTTAACAGAATTATCAACAAGCTTATTTGA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(8-95)

HTH domain found in ParB protein (HTH_ParB)

(147-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

57.647

100

0.576

Multiple sequence alignment