Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BSR20_RS09665 Genome accession   NZ_CP018189
Coordinates   2090246..2090956 (+) Length   236 a.a.
NCBI ID   WP_014635135.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2085246..2095956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS09655 (BSR20_09760) treC 2086421..2088046 (-) 1626 WP_045772031.1 alpha,alpha-phosphotrehalase -
  BSR20_RS09660 (BSR20_09765) treP 2088110..2090089 (-) 1980 WP_045772032.1 PTS system trehalose-specific EIIBC component -
  BSR20_RS09665 (BSR20_09770) treR 2090246..2090956 (+) 711 WP_014635135.1 trehalose operon repressor Regulator
  BSR20_RS09670 (BSR20_09775) - 2091010..2091570 (-) 561 WP_045772033.1 TIGR01440 family protein -
  BSR20_RS09675 (BSR20_09780) - 2091586..2091924 (-) 339 WP_073686764.1 hypothetical protein -
  BSR20_RS09680 (BSR20_09785) - 2091957..2092313 (-) 357 WP_002885732.1 hypothetical protein -
  BSR20_RS09685 (BSR20_09790) - 2092479..2093360 (-) 882 WP_002887043.1 class II fructose-bisphosphate aldolase -
  BSR20_RS09690 (BSR20_09795) - 2093484..2094470 (-) 987 WP_002886406.1 IS30 family transposase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27355.99 Da        Isoelectric Point: 6.8431

>NTDB_id=206950 BSR20_RS09665 WP_014635135.1 2090246..2090956(+) (treR) [Streptococcus salivarius strain ICDC3]
MKKYQIIYKDLEKAIHEQKYQVGDFLPTEQELVQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIEQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDASLVPQLNRSIAEYSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCVRSKVYLNNGKQFQFTESRHKLEKFKFVDYAKRHH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=206950 BSR20_RS09665 WP_014635135.1 2090246..2090956(+) (treR) [Streptococcus salivarius strain ICDC3]
ATGAAAAAATATCAGATTATTTATAAGGATTTAGAAAAAGCCATCCATGAGCAAAAGTATCAAGTGGGAGACTTTCTCCC
CACCGAGCAAGAACTGGTTCAATCTTATCAGGTTAGTCGAGACACTATACGAAAGGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCTCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAAGAACTAATAGAACAACAAGGCCTTAATTCGCAAACCAATGTTATTTCTCTGGATAAAATCATTGTTGATTC
AAAACTCTCAGAAAGAACTGGTTTTTCTAATAGCCGACAGGTTTGGCGTGTTGTTCGTCAAAGAGTCGTTGACAGCTGTG
CCTCTGTTATAGATATTGATTACCTAGACGCCAGCCTTGTTCCGCAACTAAACCGTAGCATTGCTGAATACTCTATTTAC
GACTACATTGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATCGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGCAAGGACCAGCACGTTGTCTGTGTCCGTTCAAAAGTTTATTTAAATAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTTGATTATGCCAAGCGCCATCATTAA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.851

99.576

0.606

Multiple sequence alignment