Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   BSR20_RS08220 Genome accession   NZ_CP018189
Coordinates   1790760..1791491 (-) Length   243 a.a.
NCBI ID   WP_156209919.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC3     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1785760..1796491
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR20_RS08195 (BSR20_08275) - 1786828..1788009 (+) 1182 WP_013991068.1 NAD(P)/FAD-dependent oxidoreductase -
  BSR20_RS08205 (BSR20_08285) trmB 1788226..1788867 (-) 642 WP_156209917.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  BSR20_RS08210 (BSR20_08290) ccrZ 1788877..1789668 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  BSR20_RS08215 (BSR20_08295) pptB 1789726..1790763 (-) 1038 WP_156209918.1 ABC transporter permease Regulator
  BSR20_RS08220 (BSR20_08300) pptA 1790760..1791491 (-) 732 WP_156209919.1 ABC transporter ATP-binding protein Regulator
  BSR20_RS08225 (BSR20_08305) - 1791556..1791975 (+) 420 WP_156209920.1 HIT family protein -
  BSR20_RS08230 (BSR20_08310) - 1791972..1792271 (+) 300 WP_156209921.1 hypothetical protein -
  BSR20_RS08235 (BSR20_08315) - 1792738..1793103 (-) 366 WP_156209922.1 hypothetical protein -
  BSR20_RS08240 (BSR20_08320) - 1793196..1793804 (-) 609 WP_002884297.1 DUF4230 domain-containing protein -
  BSR20_RS10545 - 1793822..1793947 (-) 126 WP_002884447.1 hypothetical protein -
  BSR20_RS08245 (BSR20_08325) - 1794384..1796489 (-) 2106 WP_049529235.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26889.11 Da        Isoelectric Point: 4.4743

>NTDB_id=206934 BSR20_RS08220 WP_156209919.1 1790760..1791491(-) (pptA) [Streptococcus salivarius strain ICDC3]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDSASYRQKIGYIP
ETPNLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKAKGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLDELRQTFGDDSTSLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=206934 BSR20_RS08220 WP_156209919.1 1790760..1791491(-) (pptA) [Streptococcus salivarius strain ICDC3]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACCTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGAAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACCATTCAGCAAGATTCAGCTAGCTATCGTCAGAAGATTGGTTACATCCCT
GAAACCCCAAACCTCTATGAAGAATTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGTCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTTAAGCTCTTTCGTTTAGATGAAAAGCTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGGATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAGCCCTTC
TTGGGCTTGGACCCCTTGGCAATCTCAGACTTAATTGAGCTTTTAGCTGAGGAAAAAGCTAAGGGCAAGGCAATTCTCAT
GTCTACACACGTTTTGGATTCGGCTGAGAAGATGTGCGACCGCTTCGTGATTTTGCATCATGGACAGGTCTTAGCACAGG
GAACTCTTGATGAGCTCCGTCAGACTTTTGGCGATGATAGTACTAGTCTTAACGATATCTACATGCAGCTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

97.942

100

0.979
  pptA Streptococcus thermophilus LMD-9

96.708

100

0.967

Multiple sequence alignment