Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AYT26_RS00660 Genome accession   NC_002570
Coordinates   137522..138895 (+) Length   457 a.a.
NCBI ID   WP_010896287.1    Uniprot ID   Q9KGG1
Organism   Halalkalibacterium halodurans C-125     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 132522..143895
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYT26_RS00640 (BH0100) - 132792..133262 (+) 471 WP_010896283.1 CtsR family transcriptional regulator -
  AYT26_RS00645 (BH0101) - 133288..133821 (+) 534 WP_010896284.1 UvrB/UvrC motif-containing protein -
  AYT26_RS00650 (BH0102) - 133824..134894 (+) 1071 WP_010896285.1 protein arginine kinase -
  AYT26_RS00655 (BH0103) clpC 134913..137354 (+) 2442 WP_010896286.1 ATP-dependent protease ATP-binding subunit ClpC -
  AYT26_RS00660 (BH0104) radA 137522..138895 (+) 1374 WP_010896287.1 DNA repair protein RadA Machinery gene
  AYT26_RS00665 (BH0105) disA 138904..139977 (+) 1074 WP_010896288.1 DNA integrity scanning diadenylate cyclase DisA -
  AYT26_RS00670 (BH0106) - 140136..141224 (+) 1089 WP_010896289.1 PIN/TRAM domain-containing protein -
  AYT26_RS00675 (BH0107) ispD 141464..142150 (+) 687 WP_010896290.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AYT26_RS00680 (BH0108) ispF 142151..142624 (+) 474 WP_010896291.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49763.21 Da        Isoelectric Point: 6.9051

>NTDB_id=20692 AYT26_RS00660 WP_010896287.1 137522..138895(+) (radA) [Halalkalibacterium halodurans C-125]
MAKKKTKFMCQECGYESAKWMGKCPGCQSWNSMVEEFTEVKAKSSRSYVTSGAGIAKPQPITKVEREQEPRIDTSMKELN
RVLGGGIVPGSLVLVGGDPGIGKSTLLLQLSARLADLKQRVLYISGEESVKQTKIRSDRLGVLSDHLYVLAETDMEKIEQ
AIGEVDPTLVIIDSIQTVYQDEITSAPGSVAQVRECTASFMRIAKTTGVAIFIVGHVTKQGAIAGPKLLEHMVDSVLYFE
GERHHTYRILRAVKNRFGSTNEMGIFEMKESGLEEVANPSEIFLEDRSSGVAGSTVVASMEGTRPVLVELQALISPTSFG
NPRRMATGVDHNRISLLMAVLEKRVGMLLQNQDAYVNVAGGVRLDEPAIDLGIAVSIASSFRNQHTNPHEVVIGEIGLTG
EVRRVSRIDQRVNEAAKLGFKRVIIPDKNLGGWTIPSTIEVIGVSTVQDALEVTLGR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=20692 AYT26_RS00660 WP_010896287.1 137522..138895(+) (radA) [Halalkalibacterium halodurans C-125]
GTGGCGAAAAAGAAAACAAAGTTTATGTGTCAAGAGTGTGGGTATGAGTCAGCCAAATGGATGGGGAAATGTCCTGGCTG
TCAAAGCTGGAACTCCATGGTCGAGGAATTTACAGAAGTTAAGGCAAAATCCTCTCGGAGTTATGTGACATCTGGAGCGG
GTATTGCTAAGCCACAGCCGATTACGAAAGTTGAGCGGGAGCAGGAGCCGCGAATCGATACATCGATGAAGGAGCTTAAC
CGAGTACTTGGTGGAGGGATCGTTCCAGGCTCACTCGTTCTTGTCGGAGGGGACCCTGGGATCGGTAAGTCAACGTTATT
GTTACAACTATCCGCCCGTCTTGCTGATTTGAAGCAACGAGTGCTCTACATTTCAGGGGAGGAATCGGTCAAGCAAACAA
AAATCCGTTCCGACCGACTAGGAGTCTTGTCTGACCATTTGTATGTATTAGCAGAAACAGATATGGAAAAGATTGAACAA
GCGATTGGAGAGGTTGATCCCACTCTTGTTATCATTGATTCCATTCAGACGGTCTACCAAGACGAGATTACGTCTGCTCC
AGGAAGTGTCGCCCAAGTACGAGAGTGTACCGCTTCCTTTATGAGAATTGCGAAAACAACGGGGGTCGCGATTTTTATCG
TCGGTCACGTGACAAAGCAAGGGGCGATTGCTGGGCCGAAATTACTTGAGCACATGGTAGACTCTGTTCTTTACTTTGAA
GGGGAGCGGCACCATACGTATCGAATTTTACGAGCGGTCAAGAATCGATTTGGCTCTACTAATGAGATGGGGATTTTTGA
AATGAAAGAGTCAGGGCTAGAGGAAGTGGCCAACCCTTCGGAAATCTTTTTAGAAGATCGCTCCAGTGGTGTGGCAGGTT
CAACGGTCGTTGCCTCGATGGAAGGCACGAGGCCCGTTTTAGTAGAGCTGCAAGCGCTCATTTCACCGACGAGCTTCGGA
AATCCAAGGCGCATGGCGACAGGGGTGGATCACAATCGAATTTCGTTGTTAATGGCAGTGCTTGAAAAGCGGGTCGGCAT
GCTATTACAAAATCAAGATGCCTACGTGAACGTGGCTGGTGGAGTGCGATTGGATGAGCCAGCGATTGATCTGGGAATTG
CTGTGAGCATTGCGTCCAGTTTTCGAAATCAACATACAAATCCCCACGAAGTTGTTATCGGTGAAATCGGGTTAACGGGG
GAGGTTCGTAGGGTATCGCGAATCGATCAACGAGTGAATGAGGCCGCGAAGCTGGGGTTTAAGCGGGTCATCATTCCAGA
TAAGAATCTTGGAGGGTGGACCATTCCTTCTACGATTGAAGTAATAGGTGTATCGACTGTTCAAGATGCGTTAGAGGTTA
CGTTAGGGAGGTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(67-221)

Subunit ChlI of Mg-chelatase (ChlI)

(345-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KGG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

72.052

100

0.722
  radA Streptococcus pneumoniae Rx1

59.292

98.906

0.586
  radA Streptococcus pneumoniae D39

59.292

98.906

0.586
  radA Streptococcus pneumoniae R6

59.292

98.906

0.586
  radA Streptococcus pneumoniae TIGR4

59.292

98.906

0.586
  radA Streptococcus mitis NCTC 12261

59.292

98.906

0.586
  radA Streptococcus mitis SK321

59.292

98.906

0.586

Multiple sequence alignment