Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ47_RS23480 Genome accession   NZ_CP023388
Coordinates   4573950..4574426 (+) Length   158 a.a.
NCBI ID   WP_001186774.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4568950..4579426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS23445 (CNQ47_23440) - 4569464..4570426 (-) 963 WP_001536515.1 hypothetical protein -
  CNQ47_RS23450 (CNQ47_23445) - 4570532..4571416 (+) 885 WP_001536514.1 YfjP family GTPase -
  CNQ47_RS23455 (CNQ47_23450) - 4571535..4572212 (+) 678 WP_016237389.1 hypothetical protein -
  CNQ47_RS23460 (CNQ47_23455) - 4572218..4572421 (+) 204 WP_016237390.1 DUF905 family protein -
  CNQ47_RS23465 (CNQ47_23460) - 4572541..4573359 (+) 819 WP_096057995.1 DUF932 domain-containing protein -
  CNQ47_RS23470 (CNQ47_23465) - 4573450..4573935 (+) 486 WP_096057996.1 antirestriction protein -
  CNQ47_RS23480 (CNQ47_23475) radC 4573950..4574426 (+) 477 WP_001186774.1 RadC family protein Machinery gene
  CNQ47_RS23485 (CNQ47_23480) - 4574495..4574716 (+) 222 WP_001552746.1 DUF987 domain-containing protein -
  CNQ47_RS23490 (CNQ47_23485) - 4574790..4575167 (+) 378 WP_001536509.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ47_RS23495 (CNQ47_23490) cbtA 4575213..4575587 (+) 375 WP_000854831.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CNQ47_RS23500 (CNQ47_23495) - 4575584..4576075 (+) 492 WP_001683023.1 DUF5983 family protein -
  CNQ47_RS23505 (CNQ47_23500) - 4576087..4576284 (+) 198 WP_021531598.1 DUF957 domain-containing protein -
  CNQ47_RS23510 (CNQ47_23505) - 4576378..4577214 (+) 837 WP_244576224.1 DUF4942 domain-containing protein -
  CNQ47_RS23515 (CNQ47_23510) - 4577283..4577678 (+) 396 WP_001536505.1 DUF6088 family protein -
  CNQ47_RS23520 (CNQ47_23515) - 4577671..4578618 (+) 948 WP_001536504.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -
  CNQ47_RS27570 - 4579070..4579181 (+) 112 Protein_4340 integrase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17661.27 Da        Isoelectric Point: 7.2020

>NTDB_id=206907 CNQ47_RS23480 WP_001186774.1 4573950..4574426(+) (radC) [Escherichia coli strain 1105]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206907 CNQ47_RS23480 WP_001186774.1 4573950..4574426(+) (radC) [Escherichia coli strain 1105]
ATGCAGCAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAGCGGGCTCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGTGTGGCCTTCACCTCCACCCGAGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399

Multiple sequence alignment