Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ47_RS22275 Genome accession   NZ_CP023388
Coordinates   4332033..4332506 (-) Length   157 a.a.
NCBI ID   WP_001296921.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4327033..4337506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS22245 (CNQ47_22240) - 4328863..4329660 (-) 798 WP_001552326.1 helix-turn-helix transcriptional regulator -
  CNQ47_RS22250 (CNQ47_22245) - 4329774..4330049 (-) 276 WP_001683517.1 type II toxin-antitoxin system RelE/ParE family toxin -
  CNQ47_RS22255 (CNQ47_22250) - 4330053..4330301 (-) 249 WP_024187601.1 ribbon-helix-helix domain-containing protein -
  CNQ47_RS22260 (CNQ47_22255) - 4330378..4331211 (-) 834 WP_001683516.1 DUF4942 domain-containing protein -
  CNQ47_RS22265 (CNQ47_22260) - 4331326..4331667 (-) 342 WP_001683515.1 TA system toxin CbtA family protein -
  CNQ47_RS22270 (CNQ47_22265) - 4331698..4332033 (-) 336 WP_000939437.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ47_RS22275 (CNQ47_22270) radC 4332033..4332506 (-) 474 WP_001296921.1 DNA repair protein RadC Machinery gene
  CNQ47_RS22280 (CNQ47_22275) - 4332536..4333354 (-) 819 WP_001683514.1 DUF932 domain-containing protein -
  CNQ47_RS22285 (CNQ47_22280) - 4333590..4334543 (-) 954 WP_001683513.1 hypothetical protein -
  CNQ47_RS22290 (CNQ47_22285) - 4335136..4335750 (+) 615 WP_001683512.1 inovirus Gp2 family protein -
  CNQ47_RS22295 (CNQ47_22290) - 4335868..4336086 (+) 219 WP_001683511.1 AlpA family phage regulatory protein -
  CNQ47_RS22300 (CNQ47_22295) - 4336306..4337091 (-) 786 WP_001683510.1 hypothetical protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17908.62 Da        Isoelectric Point: 7.5733

>NTDB_id=206906 CNQ47_RS22275 WP_001296921.1 4332033..4332506(-) (radC) [Escherichia coli strain 1105]
MSELMLTPVFSVSEQRVIRRAMRLLEKYQRNPGESFLSSDATKTWLQLHLARQEREMFVVLYLDNQNRLLEHETLFLGTI
NSTEVHPREIVKSALRHNAAAVILAHNHPSGVAEPSRADRLITTNIVKTLDLVNVRVLDHFIIGAGDVLSFAERGWL

Nucleotide


Download         Length: 474 bp        

>NTDB_id=206906 CNQ47_RS22275 WP_001296921.1 4332033..4332506(-) (radC) [Escherichia coli strain 1105]
ATGTCTGAACTGATGCTAACACCGGTGTTTTCGGTGAGTGAACAACGTGTTATCCGCCGTGCGATGCGTCTGCTGGAGAA
ATATCAACGCAATCCTGGCGAATCTTTTCTTTCCTCTGACGCCACAAAAACCTGGCTGCAACTGCATCTGGCACGACAGG
AGCGGGAAATGTTTGTTGTGCTCTACCTCGATAACCAGAACCGACTGCTGGAACACGAAACGCTATTTCTCGGCACGATT
AACAGCACGGAAGTACATCCCCGTGAGATTGTGAAATCTGCGCTACGGCACAATGCCGCAGCAGTGATCCTTGCGCATAA
CCATCCCTCCGGTGTGGCGGAACCCAGTCGGGCCGACAGGCTTATTACAACGAATATTGTTAAGACACTGGATTTGGTGA
ATGTGAGGGTACTGGATCATTTCATTATTGGGGCGGGGGATGTCCTCTCTTTTGCCGAACGGGGCTGGCTGTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.085

75.159

0.414

Multiple sequence alignment