Detailed information
Bioinformatically predicted
Overview
| Name | radC | Type | Machinery gene |
| Locus tag | CNQ47_RS15700 | Genome accession | NZ_CP023388 |
| Coordinates | 3031037..3031513 (-) | Length | 158 a.a. |
| NCBI ID | WP_001186170.1 | Uniprot ID | A0A0H2V684 |
| Organism | Escherichia coli strain 1105 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3026037..3036513
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CNQ47_RS15655 (CNQ47_15650) | ghrA | 3026200..3027138 (-) | 939 | WP_000351277.1 | glyoxylate/hydroxypyruvate reductase GhrA | - |
| CNQ47_RS15665 (CNQ47_15660) | - | 3027609..3028452 (-) | 844 | Protein_2890 | DUF4942 domain-containing protein | - |
| CNQ47_RS15670 (CNQ47_15665) | - | 3028537..3028734 (-) | 198 | WP_000772027.1 | DUF957 domain-containing protein | - |
| CNQ47_RS15675 (CNQ47_15670) | - | 3028754..3029242 (-) | 489 | WP_001054232.1 | DUF5983 family protein | - |
| CNQ47_RS15680 (CNQ47_15675) | - | 3029239..3029619 (-) | 381 | WP_000854739.1 | TA system toxin CbtA family protein | - |
| CNQ47_RS15685 (CNQ47_15680) | - | 3029666..3030040 (-) | 375 | WP_001285482.1 | type IV toxin-antitoxin system YeeU family antitoxin | - |
| CNQ47_RS15690 (CNQ47_15685) | - | 3030090..3030734 (-) | 645 | WP_000086763.1 | hypothetical protein | - |
| CNQ47_RS15695 (CNQ47_15690) | - | 3030753..3030974 (-) | 222 | WP_000692315.1 | DUF987 domain-containing protein | - |
| CNQ47_RS15700 (CNQ47_15695) | radC | 3031037..3031513 (-) | 477 | WP_001186170.1 | RadC family protein | Machinery gene |
| CNQ47_RS15705 (CNQ47_15700) | - | 3031529..3032002 (-) | 474 | WP_000855076.1 | antirestriction protein | - |
| CNQ47_RS15710 (CNQ47_15705) | - | 3032265..3033086 (-) | 822 | WP_001234710.1 | DUF932 domain-containing protein | - |
| CNQ47_RS27245 | - | 3033265..3033396 (-) | 132 | WP_032196594.1 | DUF905 family protein | - |
| CNQ47_RS15725 (CNQ47_15720) | - | 3033497..3033952 (-) | 456 | WP_000581502.1 | IrmA family protein | - |
Sequence
Protein
Download Length: 158 a.a. Molecular weight: 17646.30 Da Isoelectric Point: 7.2020
>NTDB_id=206889 CNQ47_RS15700 WP_001186170.1 3031037..3031513(-) (radC) [Escherichia coli strain 1105]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL
Nucleotide
Download Length: 477 bp
>NTDB_id=206889 CNQ47_RS15700 WP_001186170.1 3031037..3031513(-) (radC) [Escherichia coli strain 1105]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCAGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radC | Haemophilus influenzae Rd KW20 |
55.752 |
71.519 |
0.399 |