Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   BSR19_RS09840 Genome accession   NZ_CP018187
Coordinates   2142941..2143651 (+) Length   236 a.a.
NCBI ID   WP_156247058.1    Uniprot ID   A0AB37DCG9
Organism   Streptococcus salivarius strain ICDC2     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2137941..2148651
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS09830 (BSR19_09960) treC 2139116..2140741 (-) 1626 WP_156247056.1 alpha,alpha-phosphotrehalase -
  BSR19_RS09835 (BSR19_09965) treP 2140805..2142784 (-) 1980 WP_156247057.1 PTS system trehalose-specific EIIBC component -
  BSR19_RS09840 (BSR19_09970) treR 2142941..2143651 (+) 711 WP_156247058.1 trehalose operon repressor Regulator
  BSR19_RS09845 (BSR19_09975) - 2143705..2144265 (-) 561 WP_084915223.1 TIGR01440 family protein -
  BSR19_RS09850 (BSR19_09980) - 2144281..2144619 (-) 339 WP_156247059.1 hypothetical protein -
  BSR19_RS09855 (BSR19_09985) - 2144652..2145008 (-) 357 WP_045001354.1 hypothetical protein -
  BSR19_RS09860 (BSR19_09990) - 2145309..2146190 (-) 882 WP_002885816.1 class II fructose-bisphosphate aldolase -
  BSR19_RS09870 (BSR19_10000) - 2146614..2147909 (-) 1296 WP_037604092.1 glutamyl-tRNA synthetase -
  BSR19_RS09875 (BSR19_10005) rplQ 2148158..2148544 (-) 387 WP_002885709.1 50S ribosomal protein L17 -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27293.97 Da        Isoelectric Point: 7.4708

>NTDB_id=206881 BSR19_RS09840 WP_156247058.1 2142941..2143651(+) (treR) [Streptococcus salivarius strain ICDC2]
MKKYQIIYKDLEKAIHDQKYQVGDFLPTEQELGQSYQVSRDTIRKALTLLVEEGLVKKIHGSGSQVINQEQINFPVSDLT
SYQELIVQQGLNSQTNVISLDKIIVDSKLSERTGFSNSRQVWRVVRQRVVDSCASVIDIDYLDTSLVPQLNRSIAEHSIY
DYIENQLNLSISHAFKEITIDNATDQDKILIDLGKDQHVVCIRSKVYLTNGKQFQFTESRHKLEKFKFVDYAKRRH

Nucleotide


Download         Length: 711 bp        

>NTDB_id=206881 BSR19_RS09840 WP_156247058.1 2142941..2143651(+) (treR) [Streptococcus salivarius strain ICDC2]
ATGAAAAAATACCAGATTATTTATAAGGATTTAGAGAAAGCTATCCATGATCAAAAATATCAAGTGGGAGACTTTCTCCC
GACCGAGCAAGAACTGGGTCAATCTTACCAGGTTAGTCGAGACACTATACGAAAAGCATTAACCTTACTCGTTGAAGAAG
GCTTGGTCAAAAAGATTCATGGCTCTGGCTCCCAGGTTATTAACCAGGAACAAATCAACTTTCCTGTGTCTGACCTTACT
AGTTACCAGGAGCTAATAGTACAACAAGGCCTTAATTCGCAAACCAACGTTATTTCTCTGGATAAAATCATCGTTGATTC
CAAACTCTCAGAAAGAACTGGGTTTTCTAATAGCCGACAGGTCTGGCGTGTTGTTCGTCAAAGAGTCGTCGATAGCTGCG
CCTCTGTTATAGATATTGATTACCTAGATACTAGCCTTGTTCCTCAACTAAACCGTAGCATTGCTGAACACTCTATTTAC
GACTACATCGAGAATCAGCTCAACCTTAGCATTTCCCACGCCTTTAAAGAAATCACTATTGATAATGCTACCGATCAAGA
TAAGATTCTTATCGACCTAGGTAAAGACCAGCACGTTGTTTGTATCCGTTCTAAAGTTTATTTAACTAATGGAAAACAGT
TCCAATTTACGGAAAGTCGCCACAAACTTGAAAAATTCAAATTTGTCGATTATGCCAAGCGTCGTCATTGA

Domains

Predicted by InterproScan.

UTRA domain (UTRA)

(88-227)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

60.684

99.153

0.602

Multiple sequence alignment