Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ47_RS07300 Genome accession   NZ_CP023388
Coordinates   1416759..1417238 (-) Length   159 a.a.
NCBI ID   WP_001683204.1    Uniprot ID   -
Organism   Escherichia coli strain 1105     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1411759..1422238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS07270 (CNQ47_07265) lhgO 1412746..1414014 (-) 1269 WP_000271996.1 L-2-hydroxyglutarate oxidase -
  CNQ47_RS07275 (CNQ47_07270) glaH 1414034..1415011 (-) 978 WP_000993119.1 glutarate dioxygenase GlaH -
  CNQ47_RS07285 (CNQ47_07280) - 1415852..1416172 (-) 321 WP_001683207.1 TA system toxin CbtA family protein -
  CNQ47_RS07290 (CNQ47_07285) yfjZ 1416193..1416510 (-) 318 WP_001683206.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CNQ47_RS07295 (CNQ47_07290) - 1416529..1416750 (-) 222 WP_001683205.1 DUF987 domain-containing protein -
  CNQ47_RS07300 (CNQ47_07295) radC 1416759..1417238 (-) 480 WP_001683204.1 DNA repair protein RadC Machinery gene
  CNQ47_RS07305 (CNQ47_07300) - 1417250..1417708 (-) 459 WP_001683203.1 antirestriction protein -
  CNQ47_RS27175 (CNQ47_07305) - 1417801..1417983 (-) 183 Protein_1345 DUF905 family protein -
  CNQ47_RS07315 (CNQ47_07310) - 1418139..1419206 (-) 1068 WP_001683202.1 hypothetical protein -
  CNQ47_RS07320 (CNQ47_07315) - 1419497..1420207 (-) 711 WP_001683200.1 DeoR family transcriptional regulator -
  CNQ47_RS07325 (CNQ47_07320) yfjQ 1420416..1421240 (-) 825 WP_001683199.1 DUF932 domain-containing protein -
  CNQ47_RS07330 (CNQ47_07325) - 1421334..1422197 (-) 864 WP_001683198.1 GTPase family protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17783.47 Da        Isoelectric Point: 6.8501

>NTDB_id=206869 CNQ47_RS07300 WP_001683204.1 1416759..1417238(-) (radC) [Escherichia coli strain 1105]
MEQSISPLAPVLPLTVQRTVQHALALLDRHLRETGVAFTSTQAARDWLRLKMAGLEREEFMVLYLNQQNQLIAHETLFAG
SISSTEVHPREVVKRALYFNAAAVILAHNHPSGETTPSQADKALTQWLVQILQLVDIRVPDHLIVGGRQIYSFAEQGLL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=206869 CNQ47_RS07300 WP_001683204.1 1416759..1417238(-) (radC) [Escherichia coli strain 1105]
ATGGAACAGTCAATTTCCCCACTGGCTCCGGTACTCCCACTGACCGTACAACGCACTGTGCAACATGCCCTGGCCCTGCT
TGACCGCCACCTGCGCGAAACTGGCGTGGCGTTCACCTCCACACAGGCCGCCCGCGACTGGTTGCGGTTGAAAATGGCCG
GGCTTGAGCGAGAGGAGTTTATGGTGCTTTATCTCAATCAGCAGAACCAGTTGATTGCCCACGAAACCCTGTTTGCCGGT
TCCATCAGCAGCACCGAGGTACATCCCCGGGAGGTGGTCAAACGCGCCCTGTATTTCAATGCGGCAGCAGTGATACTGGC
GCATAACCATCCCTCCGGCGAGACGACGCCCAGCCAGGCTGATAAAGCTCTCACGCAGTGGCTGGTACAGATACTTCAAC
TGGTGGATATCCGCGTCCCTGACCATCTGATTGTCGGCGGTAGGCAAATCTATTCGTTCGCAGAACAGGGTCTGCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

56.731

65.409

0.371