Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CNQ47_RS07095 Genome accession   NZ_CP023388
Coordinates   1384612..1385127 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1105     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1379612..1390127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS07050 (CNQ47_07045) csrA 1380468..1380653 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CNQ47_RS07080 (CNQ47_07075) yqaB 1381842..1382408 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CNQ47_RS07085 (CNQ47_07080) yqaA 1382405..1382833 (+) 429 WP_001287462.1 YqaA family protein -
  CNQ47_RS07090 (CNQ47_07085) gshA 1382906..1384462 (+) 1557 WP_001683216.1 glutamate--cysteine ligase -
  CNQ47_RS07095 (CNQ47_07090) luxS 1384612..1385127 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CNQ47_RS07105 (CNQ47_07100) tnpA 1385323..1385781 (+) 459 WP_000526115.1 IS200/IS605-like element IS200C family transposase -
  CNQ47_RS07115 (CNQ47_07110) - 1385890..1387002 (-) 1113 WP_000638133.1 ATP-binding protein -
  CNQ47_RS07120 (CNQ47_07115) - 1386999..1387706 (-) 708 WP_001683215.1 RNA ligase family protein -
  CNQ47_RS07125 (CNQ47_07120) emrB 1387964..1389502 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=206868 CNQ47_RS07095 WP_001130211.1 1384612..1385127(+) (luxS) [Escherichia coli strain 1105]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=206868 CNQ47_RS07095 WP_001130211.1 1384612..1385127(+) (luxS) [Escherichia coli strain 1105]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCAAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment