Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   CNQ47_RS02155 Genome accession   NZ_CP023388
Coordinates   417677..418441 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain 1105     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 412677..423441
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ47_RS02140 (CNQ47_02135) yhhJ 415334..416458 (+) 1125 WP_001296492.1 ABC transporter permease -
  CNQ47_RS02145 (CNQ47_02140) nikR 416467..416868 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  CNQ47_RS02150 (CNQ47_02145) nikE 416874..417680 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  CNQ47_RS02155 (CNQ47_02150) amiE 417677..418441 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  CNQ47_RS02160 (CNQ47_02155) nikC 418441..419274 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  CNQ47_RS02165 (CNQ47_02160) nikB 419271..420215 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  CNQ47_RS02170 (CNQ47_02165) nikA 420215..421789 (-) 1575 WP_001683371.1 nickel ABC transporter substrate-binding protein -
  CNQ47_RS02175 (CNQ47_02170) acpT 421900..422487 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=206845 CNQ47_RS02155 WP_001136232.1 417677..418441(-) (amiE) [Escherichia coli strain 1105]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=206845 CNQ47_RS02155 WP_001136232.1 417677..418441(-) (amiE) [Escherichia coli strain 1105]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398

Multiple sequence alignment