Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   BSR19_RS04035 Genome accession   NZ_CP018187
Coordinates   779896..780189 (+) Length   97 a.a.
NCBI ID   WP_021144391.1    Uniprot ID   -
Organism   Streptococcus salivarius strain ICDC2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 774896..785189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR19_RS04020 (BSR19_04025) - 776921..778054 (+) 1134 WP_156246616.1 AbiH family protein -
  BSR19_RS04025 (BSR19_04030) - 778161..779375 (+) 1215 WP_156246617.1 restriction endonuclease subunit S -
  BSR19_RS04030 (BSR19_04035) - 779541..779906 (+) 366 WP_156247079.1 type II toxin-antitoxin system RelE/ParE family toxin -
  BSR19_RS04035 (BSR19_04040) HI0659 779896..780189 (+) 294 WP_021144391.1 helix-turn-helix domain-containing protein Machinery gene
  BSR19_RS04040 (BSR19_04045) - 780211..781812 (+) 1602 WP_156246618.1 type I restriction-modification system subunit M -
  BSR19_RS04045 (BSR19_04050) - 781891..782802 (+) 912 WP_037597651.1 Rpn family recombination-promoting nuclease/putative transposase -
  BSR19_RS04050 (BSR19_04055) - 782829..783086 (+) 258 WP_002890620.1 hypothetical protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10730.48 Da        Isoelectric Point: 5.8962

>NTDB_id=206845 BSR19_RS04035 WP_021144391.1 779896..780189(+) (HI0659) [Streptococcus salivarius strain ICDC2]
MKNSAIGSNWKDVRAELFTKEEILESDLRVAIMTELIEARHEKGISQKKLEELSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEQEKV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=206845 BSR19_RS04035 WP_021144391.1 779896..780189(+) (HI0659) [Streptococcus salivarius strain ICDC2]
ATGAAGAATAGTGCCATTGGCAGCAATTGGAAAGATGTGAGAGCAGAGCTCTTCACAAAGGAAGAAATCCTGGAAAGTGA
TCTGCGGGTCGCGATTATGACTGAGCTGATCGAAGCTCGGCATGAAAAGGGCATTAGCCAAAAGAAACTAGAAGAACTCA
GTGGGGTCAGTCAACCGGTCATCGCTCGGATGGAGACAGGAAAGACCAGCCCTCAATTGGACACGGTCTTGAAAGTCTTA
GCCAGTCTGGGCAAGACCCTTGCTGTCGTCCCACTGGAACAAGAAAAGGTCTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

60.44

93.814

0.567

Multiple sequence alignment