Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CNQ48_RS09735 Genome accession   NZ_CP023386
Coordinates   1932972..1934399 (-) Length   475 a.a.
NCBI ID   WP_000980538.1    Uniprot ID   -
Organism   Escherichia coli strain 1190     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1927972..1939399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ48_RS09705 (CNQ48_09705) hisL 1928556..1928606 (-) 51 WP_001364200.1 his operon leader peptide -
  CNQ48_RS09710 (CNQ48_09710) yefM 1928889..1929140 (+) 252 WP_001259257.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  CNQ48_RS09715 (CNQ48_09715) yoeB 1929137..1929391 (+) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  CNQ48_RS09720 (CNQ48_09720) yeeZ 1929474..1930298 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CNQ48_RS09725 (CNQ48_09725) yeeY 1930344..1931273 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  CNQ48_RS25665 yoeI 1931488..1931550 (+) 63 WP_010723108.1 membrane protein YoeI -
  CNQ48_RS09730 (CNQ48_09730) plaP 1931540..1932898 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CNQ48_RS09735 (CNQ48_09735) sbcB 1932972..1934399 (-) 1428 WP_000980538.1 exodeoxyribonuclease I Machinery gene
  CNQ48_RS09740 (CNQ48_09740) dacD 1934608..1935774 (+) 1167 WP_000830161.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CNQ48_RS09745 (CNQ48_09745) sbmC 1935893..1936363 (+) 471 WP_001105396.1 DNA gyrase inhibitor SbmC -
  CNQ48_RS09750 (CNQ48_09750) yeeA 1936563..1937621 (+) 1059 WP_001200892.1 FUSC family protein -
  CNQ48_RS09755 (CNQ48_09755) tmaR 1937793..1938122 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ48_RS09760 (CNQ48_09760) - 1938223..1938519 (-) 297 Protein_1814 EutP/PduV family microcompartment system protein -
  CNQ48_RS09765 (CNQ48_09765) - 1938522..1938857 (+) 336 WP_032159232.1 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54456.72 Da        Isoelectric Point: 5.3476

>NTDB_id=206792 CNQ48_RS09735 WP_000980538.1 1932972..1934399(-) (sbcB) [Escherichia coli strain 1190]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDDEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=206792 CNQ48_RS09735 WP_000980538.1 1932972..1934399(-) (sbcB) [Escherichia coli strain 1190]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATGACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCTCGGGCGAAAGGAGAAAAC
GAAGCCGCATTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGCTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCAAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACAAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTCTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAACTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCACTTTGGCAGTACGCGGAAGAGATCGTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583