Detailed information NTG0206779

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ48_RS05665
• Genome accession: NZ_CP023386
• Coordinates: 1130936..1131928 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1190
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1125936..1136928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ48_RS05635 (CNQ48_05635)	ispD	1125997..1126707 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNQ48_RS05640 (CNQ48_05640)	ispF	1126707..1127186 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ48_RS05645 (CNQ48_05645)	truD	1127183..1128232 (+)	1050	WP_000568922.1	tRNA pseudouridine(13) synthase TruD	-
CNQ48_RS05650 (CNQ48_05650)	surE	1128213..1128974 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ48_RS05655 (CNQ48_05655)	pcm	1128968..1129594 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNQ48_RS05660 (CNQ48_05660)	nlpD	1129779..1130873 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CNQ48_RS05665 (CNQ48_05665)	rpoS	1130936..1131928 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ48_RS05670 (CNQ48_05670)	-	1132049..1132456 (-)	408	WP_001208079.1	MarR family transcriptional regulator	-
CNQ48_RS05675 (CNQ48_05675)	-	1132603..1133196 (+)	594	WP_001237177.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CNQ48_RS05680 (CNQ48_05680)	-	1133196..1134623 (+)	1428	WP_000863205.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CNQ48_RS05685 (CNQ48_05685)	-	1134634..1134870 (+)	237	WP_000562977.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CNQ48_RS05690 (CNQ48_05690)	ygbN	1134909..1136273 (-)	1365	WP_000104454.1	GntP family transporter	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206779 CNQ48_RS05665 WP_000081550.1 1130936..1131928(+) (rpoS) [Escherichia coli strain 1190]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206779 CNQ48_RS05665 WP_000081550.1 1130936..1131928(+) (rpoS) [Escherichia coli strain 1190]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCCCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTAGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715