Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   CNQ48_RS04350 Genome accession   NZ_CP023386
Coordinates   865859..867034 (-) Length   391 a.a.
NCBI ID   WP_001604842.1    Uniprot ID   -
Organism   Escherichia coli strain 1190     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 860859..872034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ48_RS04340 (CNQ48_04340) - 861436..863781 (+) 2346 WP_001604844.1 beta-3-deoxy-D-manno-oct-2-ulosonic acid transferase -
  CNQ48_RS04345 (CNQ48_04345) - 863799..865766 (+) 1968 WP_001604843.1 glycosyltransferase -
  CNQ48_RS04350 (CNQ48_04350) kpsS 865859..867034 (-) 1176 WP_001604842.1 capsular biosynthesis protein Regulator
  CNQ48_RS04355 (CNQ48_04355) - 867069..869096 (-) 2028 WP_001604841.1 capsular polysaccharide biosynthesis protein -
  CNQ48_RS04360 (CNQ48_04360) kdsB 869093..869833 (-) 741 WP_001604840.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  CNQ48_RS04365 (CNQ48_04365) - 869843..871519 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 391 a.a.        Molecular weight: 46538.69 Da        Isoelectric Point: 10.0239

>NTDB_id=206775 CNQ48_RS04350 WP_001604842.1 865859..867034(-) (kpsS) [Escherichia coli strain 1190]
MQGNALTVLLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLTPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALVHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFRGYLLVKTQVNGVYYGE

Nucleotide


Download         Length: 1176 bp        

>NTDB_id=206775 CNQ48_RS04350 WP_001604842.1 865859..867034(-) (kpsS) [Escherichia coli strain 1190]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCTTTTTTCAA
TGACGTCGCCGAATGGTTAGAGTCATTAGGACGTAACGCTGTGAATGTTGTATTCAACGGCGGGGATCGTTTTTACTGCC
GTCATCGACAATACCTGGCTTACTACCAGACACCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGACACTATCCTCTGCTTTGGCGACTGCCGCCCATTGCATAAAGAAGCAAAACGGTGGGCAAAGTCGAAAGGTATCCG
CTTCCTGGCATTTGAAGAAGGATATTTACGCCCGCAATTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCATGTTGAGAACTTAACACCTTCAACAATG
AAACGTATTGGTCATGCGATGTGGTATTACCTGATGGGCTGGCATTACCGTCATGAGTTTCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTACCGAGGTTAATGAACGAGTTGGATCAACGTTATTATCTTGCCGTTTTGCAGGTATATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCGCGTAAAGCGCCGAAAGA
AAGTTATTTGGTGATCAAACATCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGCTAAGTAAGG
AATATGGTTTAGGTGAGCGAGTCATTTATGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCAGTGGTT
ACGATTAACAGTACGGCGGGGATCTCTGCGCTGGTTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAGGGCTTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGGGTATTTATTGGTGAAGACACAGGTTAATGGGGTTTATTATGGGGAATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

40.103

99.488

0.399

Multiple sequence alignment