Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ49_RS23785 Genome accession   NZ_CP023383
Coordinates   4599452..4600120 (-) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain 1223     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4594452..4605120
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ49_RS23755 (CNQ49_23755) rfaQ 4594624..4595694 (-) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -
  CNQ49_RS23760 (CNQ49_23760) waaA 4596101..4597378 (+) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNQ49_RS23765 (CNQ49_23765) coaD 4597386..4597865 (+) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CNQ49_RS23770 (CNQ49_23770) mutM 4597904..4598713 (-) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNQ49_RS23775 (CNQ49_23775) rpmG 4598811..4598978 (-) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNQ49_RS23780 (CNQ49_23780) rpmB 4598999..4599235 (-) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNQ49_RS23785 (CNQ49_23785) radC 4599452..4600120 (-) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  CNQ49_RS23790 (CNQ49_23790) coaBC 4600292..4601512 (+) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNQ49_RS23795 (CNQ49_23795) dut 4601490..4601948 (+) 459 WP_000976070.1 dUTP diphosphatase -
  CNQ49_RS23800 (CNQ49_23800) slmA 4602055..4602651 (+) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CNQ49_RS23805 (CNQ49_23805) pyrE 4602688..4603329 (-) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CNQ49_RS23810 (CNQ49_23810) rph 4603394..4604110 (-) 717 WP_001247093.1 ribonuclease PH -
  CNQ49_RS23820 (CNQ49_23820) yicC 4604237..4605100 (+) 864 WP_000621340.1 YicC/YloC family endoribonuclease -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=206751 CNQ49_RS23785 WP_001336353.1 4599452..4600120(-) (radC) [Escherichia coli strain 1223]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206751 CNQ49_RS23785 WP_001336353.1 4599452..4600120(-) (radC) [Escherichia coli strain 1223]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment