Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BSR08_RS23200 Genome accession   NZ_CP018184
Coordinates   121..642 (+) Length   173 a.a.
NCBI ID   WP_250634999.1    Uniprot ID   -
Organism   Bacillus subtilis strain KH2     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..5642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS23200 rapC 121..642 (+) 522 WP_250634999.1 hypothetical protein Regulator
  BSR08_RS23205 - 662..967 (+) 306 WP_250635001.1 tetratricopeptide repeat protein -
  BSR08_RS23210 - 1018..1191 (+) 174 WP_250635000.1 hypothetical protein -
  BSR08_RS23215 (BSR08_00015) phrH 1228..1402 (+) 175 Protein_3 phosphatase RapH inhibitor PhrH -
  BSR08_RS00015 (BSR08_00020) - 1562..2280 (+) 719 Protein_4 YebC/PmpR family DNA-binding transcriptional regulator -
  BSR08_RS00020 (BSR08_00025) - 2414..3030 (+) 617 Protein_5 spore coat protein -
  BSR08_RS00025 (BSR08_00030) - 3192..3728 (+) 537 WP_072592509.1 TetR/AcrR family transcriptional regulator -
  BSR08_RS00030 (BSR08_00035) cotJA 3905..4152 (+) 248 Protein_7 spore coat-associated protein CotJA -
  BSR08_RS00035 (BSR08_00040) cotJB 4136..4399 (+) 264 WP_014479095.1 spore coat protein CotJB -
  BSR08_RS00040 (BSR08_00045) cotJC 4413..4980 (+) 568 Protein_9 spore coat protein CotJC -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 21015.03 Da        Isoelectric Point: 7.3489

>NTDB_id=206749 BSR08_RS23200 WP_250634999.1 121..642(+) (rapC) [Bacillus subtilis strain KH2]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKRRWSRTFRRWKRIRFADLLFLMCFRHQLMLDYLEPGQPYGNRPTVTE
LLETIETLRKNSQPFEYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQPMFDASYS
SSLDIYQTIPYTH

Nucleotide


Download         Length: 522 bp        

>NTDB_id=206749 BSR08_RS23200 WP_250634999.1 121..642(+) (rapC) [Bacillus subtilis strain KH2]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTACAAGATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTTTGAAGCGGAGGTGGAGCAGGACATTCAGAAGATGGAAGAGGATCAGATTTGCTGATCTATTATTTC
TGATGTGTTTTCGGCACCAGCTGATGCTTGATTATTTGGAGCCGGGACAGCCTTACGGAAATCGTCCTACAGTGACAGAG
CTTCTTGAAACGATTGAGACCCTCAGAAAAAACTCACAGCCTTTTGAATACTACTCTTTGTTTTTCCGCGGCATGTATGA
ATTTGACCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAGATGAAA
TTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAACCCATGTTCGATGCATCATATTCT
TCAAGCCTAGACATTTATCAAACCATCCCTTATACGCATTAG

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-64)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

52.5

92.486

0.486
  rapF Bacillus subtilis subsp. subtilis str. 168

46.341

94.798

0.439

Multiple sequence alignment