Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   BSR08_RS20165 Genome accession   NZ_CP018184
Coordinates   3752426..3752824 (-) Length   132 a.a.
NCBI ID   WP_014478800.1    Uniprot ID   A0A0D1L5A4
Organism   Bacillus subtilis strain KH2     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3747426..3757824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS22975 - 3748176..3748373 (+) 198 WP_121509395.1 hypothetical protein -
  BSR08_RS20135 (BSR08_20410) yckC 3748393..3748848 (+) 456 WP_014478793.1 RDD family protein -
  BSR08_RS20140 (BSR08_20415) yckD 3748930..3749262 (+) 333 WP_014478794.1 YckD family protein -
  BSR08_RS20145 (BSR08_20420) - 3749390..3749812 (+) 423 WP_014478795.1 MarR family transcriptional regulator -
  BSR08_RS20150 (BSR08_20425) - 3749800..3750120 (+) 321 WP_014478796.1 DUF3147 family protein -
  BSR08_RS20155 (BSR08_20430) - 3750139..3750883 (+) 745 Protein_3927 AAA family ATPase -
  BSR08_RS20160 (BSR08_20435) bglC 3750956..3752389 (+) 1434 WP_014478799.1 6-phospho-beta-glucosidase -
  BSR08_RS20165 (BSR08_20440) nin/comJ 3752426..3752824 (-) 399 WP_014478800.1 DNA-entry nuclease inhibitor Regulator
  BSR08_RS20170 (BSR08_20445) nucA/comI 3752851..3753300 (-) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  BSR08_RS20175 (BSR08_20450) tlpC 3753468..3755189 (-) 1722 Protein_3931 methyl-accepting chemotaxis protein TlpC -
  BSR08_RS20180 (BSR08_20455) hxlB 3755300..3755857 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  BSR08_RS20185 (BSR08_20460) hxlA 3755863..3756495 (-) 633 WP_014478804.1 3-hexulose-6-phosphate synthase -
  BSR08_RS20190 (BSR08_20465) hxlR 3756724..3757086 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 15006.98 Da        Isoelectric Point: 4.8991

>NTDB_id=206743 BSR08_RS20165 WP_014478800.1 3752426..3752824(-) (nin/comJ) [Bacillus subtilis strain KH2]
MIKSWKPQELSISYHQFTVFQKDSTPPIMDWTDEAIEKGYTAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=206743 BSR08_RS20165 WP_014478800.1 3752426..3752824(-) (nin/comJ) [Bacillus subtilis strain KH2]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TATAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATACTGCGGCAGACGGAGCCATTTCATTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATTATGTCTAAGAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0D1L5A4

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

97.727

100

0.977


Multiple sequence alignment