Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   BSR08_RS18180 Genome accession   NZ_CP018184
Coordinates   3387568..3388680 (+) Length   370 a.a.
NCBI ID   WP_014478578.1    Uniprot ID   -
Organism   Bacillus subtilis strain KH2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3382568..3393680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSR08_RS18155 (BSR08_18410) rnpA 3383278..3383628 (-) 351 WP_014481515.1 ribonuclease P protein component -
  BSR08_RS18160 (BSR08_18415) rpmH 3383780..3383914 (-) 135 WP_003178075.1 50S ribosomal protein L34 -
  BSR08_RS18165 (BSR08_18420) dnaA 3384541..3385881 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  BSR08_RS18170 (BSR08_18425) dnaN 3386070..3387206 (+) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  BSR08_RS18175 (BSR08_18430) rlbA 3387337..3387552 (+) 216 WP_003226810.1 ribosome maturation protein RlbA -
  BSR08_RS18180 (BSR08_18435) recF 3387568..3388680 (+) 1113 WP_014478578.1 DNA replication/repair protein RecF Machinery gene
  BSR08_RS18185 (BSR08_18440) remB 3388698..3388943 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  BSR08_RS18190 (BSR08_18445) gyrB 3388998..3390914 (+) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  BSR08_RS18195 (BSR08_18450) gyrA 3391125..3393590 (+) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42304.34 Da        Isoelectric Point: 7.3660

>NTDB_id=206737 BSR08_RS18180 WP_014478578.1 3387568..3388680(+) (recF) [Bacillus subtilis strain KH2]
MYIQNLELSSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLIEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=206737 BSR08_RS18180 WP_014478578.1 3387568..3388680(+) (recF) [Bacillus subtilis strain KH2]
TTGTATATCCAGAACTTAGAACTTTCATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATTGGACAGGTTTCTCCCGTCTATCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTATAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTTACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGATTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.459

100

0.995

Multiple sequence alignment