Detailed information NTG0206733

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ49_RS18525
• Genome accession: NZ_CP023383
• Coordinates: 3593118..3594110 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1223
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3588118..3599110

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ49_RS18505 (CNQ49_18505)	otnK	3588893..3590155 (+)	1263	WP_000590405.1	3-oxo-tetronate kinase	-
CNQ49_RS18510 (CNQ49_18510)	ygbL	3590152..3590790 (+)	639	WP_001278994.1	aldolase	-
CNQ49_RS18515 (CNQ49_18515)	ygbM	3590795..3591571 (+)	777	WP_001136918.1	HPr family phosphocarrier protein	-
CNQ49_RS18520 (CNQ49_18520)	ygbN	3591660..3593024 (+)	1365	WP_049254918.1	GntP family transporter	-
CNQ49_RS18525 (CNQ49_18525)	rpoS	3593118..3594110 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ49_RS18530 (CNQ49_18530)	nlpD	3594173..3595267 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CNQ49_RS18535 (CNQ49_18535)	pcm	3595452..3596078 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNQ49_RS18540 (CNQ49_18540)	surE	3596072..3596833 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ49_RS18545 (CNQ49_18545)	truD	3596814..3597863 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CNQ49_RS18550 (CNQ49_18550)	ispF	3597860..3598339 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ49_RS18555 (CNQ49_18555)	ispD	3598339..3599049 (-)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206733 CNQ49_RS18525 WP_000081550.1 3593118..3594110(-) (rpoS) [Escherichia coli strain 1223]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206733 CNQ49_RS18525 WP_000081550.1 3593118..3594110(-) (rpoS) [Escherichia coli strain 1223]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715