Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CNQ49_RS18245 Genome accession   NZ_CP023383
Coordinates   3540640..3541155 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1223     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3535640..3546155
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ49_RS18220 (CNQ49_18220) ygaZ 3536039..3536776 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  CNQ49_RS18225 (CNQ49_18225) ygaH 3536766..3537101 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CNQ49_RS18230 (CNQ49_18230) emrR 3537192..3537722 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CNQ49_RS18235 (CNQ49_18235) emrA 3537849..3539021 (+) 1173 WP_049254708.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CNQ49_RS18240 (CNQ49_18240) emrB 3539038..3540576 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CNQ49_RS18245 (CNQ49_18245) luxS 3540640..3541155 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CNQ49_RS18250 (CNQ49_18250) gshA 3541305..3542861 (-) 1557 WP_023281437.1 glutamate--cysteine ligase -
  CNQ49_RS18255 (CNQ49_18255) yqaA 3542934..3543362 (-) 429 WP_001287454.1 YqaA family protein -
  CNQ49_RS18260 (CNQ49_18260) yqaB 3543359..3543925 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CNQ49_RS18290 (CNQ49_18290) csrA 3545518..3545703 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=206730 CNQ49_RS18245 WP_001130211.1 3540640..3541155(-) (luxS) [Escherichia coli strain 1223]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=206730 CNQ49_RS18245 WP_001130211.1 3540640..3541155(-) (luxS) [Escherichia coli strain 1223]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment