Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   BSQ49_RS03265 Genome accession   NZ_CP018176
Coordinates   700922..702733 (+) Length   603 a.a.
NCBI ID   WP_141052889.1    Uniprot ID   -
Organism   Liquorilactobacillus hordei strain TMW 1.1822     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 695922..707733
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSQ49_RS03235 (BSQ49_03245) - 696053..696610 (-) 558 WP_141052885.1 M15 family metallopeptidase -
  BSQ49_RS03240 (BSQ49_03250) - 696668..697129 (-) 462 WP_141052886.1 hypothetical protein -
  BSQ49_RS03245 (BSQ49_03255) - 697195..697935 (+) 741 WP_057868852.1 MBL fold metallo-hydrolase -
  BSQ49_RS03250 (BSQ49_03260) spxA 698304..698702 (+) 399 WP_057868853.1 transcriptional regulator SpxA -
  BSQ49_RS03255 (BSQ49_03265) - 698944..699756 (+) 813 WP_141052887.1 adaptor protein MecA -
  BSQ49_RS03260 (BSQ49_03270) - 699823..700821 (+) 999 WP_141052888.1 competence protein CoiA -
  BSQ49_RS03265 (BSQ49_03275) pepF 700922..702733 (+) 1812 WP_141052889.1 oligoendopeptidase F Regulator
  BSQ49_RS03270 (BSQ49_03280) - 702906..703529 (-) 624 WP_223389263.1 DsbA family protein -
  BSQ49_RS03275 (BSQ49_03285) - 703742..704377 (+) 636 WP_141052890.1 GTP pyrophosphokinase -
  BSQ49_RS03280 (BSQ49_03290) - 704469..705275 (+) 807 WP_141052891.1 NAD kinase -
  BSQ49_RS03285 (BSQ49_03295) - 705265..706167 (+) 903 WP_057868860.1 RluA family pseudouridine synthase -
  BSQ49_RS03290 (BSQ49_03300) mgtE 706175..707542 (+) 1368 WP_057868861.1 magnesium transporter -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69433.32 Da        Isoelectric Point: 5.7273

>NTDB_id=206628 BSQ49_RS03265 WP_141052889.1 700922..702733(+) (pepF) [Liquorilactobacillus hordei strain TMW 1.1822]
MSNEITKLRNRSEVPEELKWDLTKVYQNENEFTEDINKIQEEIKIVGKLKGTLFDSSTALKKVLKTYFAVERMTVKAYVY
ASMLSDQDTNNKKNQGLFSQVQQLYAKVAAAFAWFEPELLTLGQTKLDEYYSEDSELVVYKKYIDEIMAKKDHLLSEKEE
KLLAGASDIFATPENIFGILNNADLKFPTVTDEKGNQVELSHGLYGKLLESGNRGVRKNAFQGLYKTYKQFENTFATSLA
AHVHTHNFQANTRNYPDAISAALGANDIPVSVYDTLVERVNKHLDLLHRYVKIRKKLLQLNSVHMYDLYTPITKLPEEEY
TYQNSKKIALESLSVFGADYIQIVEEAFKSRWIDVVENTGKRSGAYSSGMFDTPPYILLNWQDNLESLFTLVHEMGHSMH
SYLSNHNQPYHYSDYSIFVAEIASTTNENILTQYLLDHSDDLQFKAYVLNHYLDGFKGTVYRQTQFAEFERWLHDQDKKG
LPLTSQELNNKYADLNKHYYGPAITNDPEIALEWSRIPHFYYNFYVYQYATGFAAASALASKIIKEGPDSYLRFLKSGSS
ALPIDVVKEAGVDMTKPDYLDDAFVVFEQRLNELENILEKLKR

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=206628 BSQ49_RS03265 WP_141052889.1 700922..702733(+) (pepF) [Liquorilactobacillus hordei strain TMW 1.1822]
ATGTCAAATGAGATTACAAAACTAAGAAACAGAAGCGAAGTACCTGAAGAGTTAAAATGGGATTTAACAAAGGTATATCA
AAATGAAAATGAATTTACTGAAGATATTAACAAAATACAAGAAGAAATTAAAATAGTAGGTAAATTAAAAGGCACGCTTT
TTGACAGTAGTACTGCTTTAAAAAAGGTTTTGAAAACTTACTTTGCAGTTGAGAGAATGACAGTTAAAGCATATGTTTAC
GCTAGTATGTTGAGTGATCAGGATACAAATAATAAGAAAAATCAAGGATTATTCTCACAAGTACAACAATTATATGCGAA
AGTTGCTGCGGCTTTTGCTTGGTTTGAACCAGAACTTTTGACATTGGGACAAACAAAGTTGGATGAATATTATAGTGAAG
ATTCTGAATTAGTGGTATACAAGAAGTATATAGACGAAATTATGGCCAAGAAAGATCATCTATTATCTGAAAAAGAAGAA
AAGCTTCTTGCAGGAGCATCCGACATCTTTGCAACTCCAGAAAATATTTTTGGGATATTGAATAATGCTGATCTTAAGTT
TCCAACTGTAACGGATGAAAAGGGAAATCAGGTTGAGTTATCACACGGATTGTATGGAAAGTTATTGGAATCTGGGAATC
GTGGAGTTCGAAAAAATGCATTTCAAGGATTATATAAAACGTATAAACAATTTGAAAATACTTTTGCAACTTCTCTTGCA
GCACATGTGCATACACATAACTTTCAGGCAAATACCAGAAATTATCCAGATGCGATTTCAGCAGCACTAGGAGCTAATGA
TATTCCTGTTTCCGTTTATGATACGCTAGTTGAGCGTGTGAATAAACATCTGGATTTATTACACCGTTATGTAAAAATTC
GAAAGAAATTATTGCAATTGAATTCGGTTCATATGTATGATTTGTATACACCAATTACAAAATTACCTGAAGAAGAATAC
ACTTACCAAAATTCTAAGAAAATAGCTCTGGAATCATTAAGCGTATTTGGAGCAGATTATATTCAGATTGTAGAAGAAGC
ATTTAAGAGTCGCTGGATAGATGTTGTGGAGAATACTGGTAAACGTAGTGGAGCTTATTCTTCTGGAATGTTTGATACGC
CACCATATATTTTACTTAACTGGCAGGATAATTTGGAGAGCCTTTTCACATTAGTGCATGAAATGGGCCACAGTATGCAT
TCATATTTAAGTAATCATAATCAACCATATCATTATAGTGATTATTCAATTTTTGTTGCAGAAATTGCATCGACAACTAA
TGAAAATATTTTGACACAATACTTACTTGATCATAGTGATGACTTGCAATTTAAGGCATATGTATTGAACCACTATTTAG
ATGGATTTAAAGGAACGGTGTATCGACAGACTCAATTTGCCGAGTTCGAGCGTTGGTTACATGATCAGGATAAAAAAGGA
TTACCTTTGACCTCACAAGAACTTAATAATAAATATGCTGATTTAAACAAGCATTATTATGGACCTGCAATTACTAATGA
TCCAGAAATTGCTTTAGAATGGTCAAGAATTCCTCATTTTTACTACAATTTCTATGTATATCAGTACGCAACTGGTTTTG
CAGCAGCAAGTGCACTTGCAAGTAAGATCATAAAAGAAGGTCCAGATAGTTATCTTAGGTTTTTGAAATCAGGTAGCTCA
GCACTTCCAATAGATGTTGTTAAAGAAGCTGGAGTTGACATGACGAAACCAGATTATTTAGATGATGCATTTGTGGTATT
TGAACAGCGTCTAAATGAACTTGAAAATATTTTGGAGAAACTAAAACGATAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(208-584)

Oligopeptidase F (Peptidase_M3_N)

(118-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.337

98.507

0.496

Multiple sequence alignment