Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LPB136_RS10390 Genome accession   NZ_CP018155
Coordinates   2273033..2274391 (+) Length   452 a.a.
NCBI ID   WP_072556262.1    Uniprot ID   A0A1L3JKS9
Organism   Tenacibaculum todarodis strain LPB0136     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2268033..2279391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB136_RS10360 (LPB136_10310) - 2269099..2269920 (-) 822 WP_072556256.1 glycogen/starch synthase -
  LPB136_RS10365 (LPB136_10315) panC 2270019..2270864 (+) 846 WP_072556257.1 pantoate--beta-alanine ligase -
  LPB136_RS10370 (LPB136_10320) panD 2270913..2271263 (+) 351 WP_072556258.1 aspartate 1-decarboxylase -
  LPB136_RS10375 (LPB136_10325) - 2271266..2272213 (+) 948 WP_072556259.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LPB136_RS10380 (LPB136_10330) - 2272445..2272675 (+) 231 WP_072556260.1 addiction module protein -
  LPB136_RS10385 (LPB136_10335) - 2272665..2272946 (+) 282 WP_072556261.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LPB136_RS10390 (LPB136_10340) radA 2273033..2274391 (+) 1359 WP_072556262.1 DNA repair protein RadA Machinery gene
  LPB136_RS10395 (LPB136_10345) - 2274471..2274683 (-) 213 WP_072556263.1 hypothetical protein -
  LPB136_RS10400 (LPB136_10350) - 2274723..2275199 (-) 477 WP_072556264.1 hypothetical protein -
  LPB136_RS10405 (LPB136_10355) - 2275211..2276983 (-) 1773 WP_072556265.1 hypothetical protein -
  LPB136_RS10410 (LPB136_10360) - 2277132..2277371 (+) 240 WP_237267381.1 helix-turn-helix domain-containing protein -
  LPB136_RS10415 (LPB136_10365) - 2277580..2279364 (-) 1785 WP_072556266.1 ribonucleoside-diphosphate reductase subunit alpha -

Sequence

Protein


Download         Length: 452 a.a.        Molecular weight: 49319.79 Da        Isoelectric Point: 7.6989

>NTDB_id=206587 LPB136_RS10390 WP_072556262.1 2273033..2274391(+) (radA) [Tenacibaculum todarodis strain LPB0136]
MAKTKTTFFCQNCGTQHAKWVGQCGACKEWNTIVEEVIQKEEKRSWKQATTAKSVTKPLKIADIQLNPEERVITNNNELD
TVLGGGLVKGSVTLLGGEPGIGKSTLLLQVALNIKQKVLYVSGEESQSQIKMRAERLESSNSNCLILTETNTQQIFKNIE
EVAPEVLVIDSIQTLHTNSIEASPGSISQIRETSAELIKFAKETATPVLLIGHINKEGHIAGPKILEHMVDVVLQFEGDR
NHTYRILRSQKNRFGSTAELGIYEMLSTGLREVSNPSEILISKKDADLSGTAIASTLEGIRPLMIEIQALVSTAVYGTPQ
RSTTGYNLKRLHMILAVLEKRAGFKLGAKDVFLNVTGGINVDDPAIDLAVVAAILSSNQDIAINPNVCFAAEVGLAGEIR
PVSKIDQRIIEAEKLGYKTFVASKYNKTASKNHNIKLILVGKIEEAFATLFA

Nucleotide


Download         Length: 1359 bp        

>NTDB_id=206587 LPB136_RS10390 WP_072556262.1 2273033..2274391(+) (radA) [Tenacibaculum todarodis strain LPB0136]
ATGGCAAAAACCAAAACAACTTTTTTCTGTCAAAACTGTGGAACTCAACACGCAAAATGGGTTGGACAATGTGGCGCTTG
TAAAGAGTGGAATACCATTGTAGAAGAAGTAATTCAGAAAGAAGAAAAAAGAAGTTGGAAACAAGCCACAACAGCAAAAT
CAGTTACAAAACCCTTAAAAATTGCCGACATTCAGTTAAATCCTGAAGAAAGAGTAATTACCAATAATAACGAACTAGAC
ACCGTTCTTGGTGGCGGATTGGTAAAAGGATCTGTAACACTTTTAGGTGGAGAACCCGGAATTGGAAAATCTACTTTATT
ACTGCAAGTTGCTTTAAACATCAAACAAAAAGTACTGTATGTTTCAGGTGAAGAAAGTCAATCGCAAATAAAAATGCGCG
CAGAACGGTTAGAAAGTAGCAACTCTAATTGCTTAATTTTAACGGAAACAAATACGCAACAAATTTTTAAAAACATAGAA
GAAGTTGCACCAGAAGTTTTGGTGATAGATTCTATTCAAACATTACACACAAATTCTATTGAAGCTTCTCCAGGAAGTAT
TTCTCAAATTAGAGAAACTTCCGCAGAATTGATAAAATTTGCTAAAGAAACAGCAACTCCAGTATTGCTAATTGGTCATA
TTAACAAAGAAGGACACATTGCTGGCCCAAAAATTTTAGAACACATGGTAGATGTTGTTTTACAATTTGAAGGCGACAGA
AACCATACGTATAGAATATTACGCTCACAAAAAAATAGATTTGGTTCTACAGCAGAATTAGGTATTTACGAAATGCTTTC
AACCGGATTAAGAGAGGTTTCTAATCCATCAGAAATATTAATTTCTAAAAAAGATGCCGATTTAAGCGGAACCGCAATTG
CATCTACTTTAGAAGGAATTAGACCGTTAATGATAGAAATACAAGCCTTGGTTTCTACAGCAGTTTACGGAACACCTCAA
CGTTCTACAACAGGTTATAATCTAAAAAGATTGCACATGATTTTAGCCGTGCTAGAAAAAAGAGCAGGCTTTAAATTAGG
TGCAAAAGATGTGTTTTTAAACGTTACTGGCGGAATTAATGTTGACGACCCTGCAATTGACTTAGCAGTTGTTGCGGCAA
TTTTATCATCTAACCAAGATATTGCAATAAACCCAAATGTTTGTTTTGCTGCAGAAGTTGGTTTGGCTGGAGAAATAAGA
CCCGTTTCTAAAATAGACCAACGAATTATTGAAGCAGAAAAGTTAGGTTATAAAACTTTTGTTGCTTCAAAATACAATAA
AACAGCCTCTAAAAATCACAATATAAAATTGATTTTAGTTGGTAAAATTGAAGAGGCCTTTGCAACGTTGTTTGCTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(70-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(330-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3JKS9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.119

100

0.493
  radA Streptococcus mitis NCTC 12261

48.352

100

0.487
  radA Streptococcus mitis SK321

48.352

100

0.487
  radA Streptococcus pneumoniae Rx1

48.352

100

0.487
  radA Streptococcus pneumoniae D39

48.352

100

0.487
  radA Streptococcus pneumoniae R6

48.352

100

0.487
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.487

Multiple sequence alignment