Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   BSF20_RS19260 Genome accession   NZ_CP018152
Coordinates   3880104..3880568 (+) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3875104..3885568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS20620 (BSF20_18835) - 3875617..3876162 (-) 546 Protein_3735 hypothetical protein -
  BSF20_RS19240 (BSF20_18840) fadH 3876273..3877037 (-) 765 WP_003154618.1 2,4-dienoyl-CoA reductase -
  BSF20_RS19245 (BSF20_18845) - 3877181..3878044 (+) 864 WP_024085238.1 metallophosphoesterase -
  BSF20_RS19250 (BSF20_18850) - 3878119..3878613 (+) 495 WP_088037173.1 L,D-transpeptidase family protein -
  BSF20_RS19255 (BSF20_18855) - 3878689..3879981 (+) 1293 WP_044053156.1 MFS transporter -
  BSF20_RS19260 (BSF20_18860) kre 3880104..3880568 (+) 465 WP_003154622.1 YkyB family protein Regulator
  BSF20_RS19265 (BSF20_18865) cheV 3880611..3881522 (-) 912 WP_014304917.1 chemotaxis protein CheV -
  BSF20_RS20370 - 3881711..3881872 (+) 162 WP_007409608.1 hypothetical protein -
  BSF20_RS19275 (BSF20_18870) - 3882073..3883292 (+) 1220 Protein_3743 aminotransferase A -
  BSF20_RS19280 (BSF20_18875) - 3883268..3885088 (-) 1821 WP_003154628.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=206563 BSF20_RS19260 WP_003154622.1 3880104..3880568(+) (kre) [Bacillus amyloliquefaciens strain LM2303]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=206563 BSF20_RS19260 WP_003154622.1 3880104..3880568(+) (kre) [Bacillus amyloliquefaciens strain LM2303]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment