Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BSF20_RS19155 Genome accession   NZ_CP018152
Coordinates   3864112..3864708 (-) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3859112..3869708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS19130 (BSF20_18735) mobB 3859488..3860009 (-) 522 WP_044053164.1 molybdopterin-guanine dinucleotide biosynthesis protein B -
  BSF20_RS19135 (BSF20_18740) glp 3859970..3861262 (-) 1293 WP_015388302.1 gephyrin-like molybdotransferase Glp -
  BSF20_RS19140 (BSF20_18745) - 3861280..3862299 (-) 1020 WP_072588523.1 molybdopterin-synthase adenylyltransferase MoeB -
  BSF20_RS19145 (BSF20_18750) - 3862351..3862953 (-) 603 WP_044053163.1 molybdenum cofactor guanylyltransferase -
  BSF20_RS19150 (BSF20_18755) - 3863099..3864091 (+) 993 WP_048367200.1 hypothetical protein -
  BSF20_RS19155 (BSF20_18760) rok 3864112..3864708 (-) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  BSF20_RS19160 (BSF20_18765) - 3865160..3865618 (-) 459 WP_024085241.1 TlpA disulfide reductase family protein -
  BSF20_RS19165 (BSF20_18770) - 3865906..3866712 (+) 807 WP_044053161.1 mechanosensitive ion channel family protein -
  BSF20_RS19170 (BSF20_18775) - 3866746..3866991 (-) 246 WP_003154596.1 YkuS family protein -
  BSF20_RS19175 (BSF20_18780) - 3867052..3868176 (-) 1125 WP_014304923.1 N-acetyldiaminopimelate deacetylase -
  BSF20_RS19180 (BSF20_18785) dapD 3868247..3868957 (-) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BSF20_RS19185 (BSF20_18790) - 3869039..3869494 (-) 456 WP_044053160.1 flavodoxin -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=206562 BSF20_RS19155 WP_003154591.1 3864112..3864708(-) (rok) [Bacillus amyloliquefaciens strain LM2303]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=206562 BSF20_RS19155 WP_003154591.1 3864112..3864708(-) (rok) [Bacillus amyloliquefaciens strain LM2303]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACGGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCGCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTGCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843

Multiple sequence alignment