Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BSF20_RS19045 Genome accession   NZ_CP018152
Coordinates   3843911..3844195 (-) Length   94 a.a.
NCBI ID   WP_024085249.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain LM2303     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3838911..3849195
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSF20_RS19025 (BSF20_18630) ade 3839017..3840750 (-) 1734 WP_003154552.1 adenine deaminase -
  BSF20_RS19030 (BSF20_18635) ktrC 3840899..3841564 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BSF20_RS19035 (BSF20_18640) - 3841605..3842432 (-) 828 WP_003154555.1 gamma-glutamylcyclotransferase -
  BSF20_RS19040 (BSF20_18645) - 3842434..3843738 (-) 1305 WP_014304932.1 ATP-binding protein -
  BSF20_RS19045 (BSF20_18650) abrB 3843911..3844195 (-) 285 WP_024085249.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BSF20_RS19055 (BSF20_18660) mreBH 3844464..3845471 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BSF20_RS20220 - 3845543..3845677 (+) 135 WP_003154559.1 protein YkpC -
  BSF20_RS19060 (BSF20_18665) - 3845778..3847010 (+) 1233 WP_044053170.1 aminopeptidase -
  BSF20_RS19065 (BSF20_18670) - 3847040..3847948 (-) 909 WP_044053169.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10574.41 Da        Isoelectric Point: 5.2271

>NTDB_id=206561 BSF20_RS19045 WP_024085249.1 3843911..3844195(-) (abrB) [Bacillus amyloliquefaciens strain LM2303]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=206561 BSF20_RS19045 WP_024085249.1 3843911..3844195(-) (abrB) [Bacillus amyloliquefaciens strain LM2303]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGCGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTGATGACCGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAAGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment