Detailed information NTG0206539

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ51_RS05495
• Genome accession: NZ_CP023371
• Coordinates: 1062564..1063556 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1283
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1057564..1068556

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ51_RS05465 (CNQ51_05465)	ispD	1057625..1058335 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNQ51_RS05470 (CNQ51_05470)	ispF	1058335..1058814 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ51_RS05475 (CNQ51_05475)	truD	1058811..1059860 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
CNQ51_RS05480 (CNQ51_05480)	surE	1059841..1060602 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ51_RS05485 (CNQ51_05485)	pcm	1060596..1061222 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNQ51_RS05490 (CNQ51_05490)	nlpD	1061407..1062501 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CNQ51_RS05495 (CNQ51_05495)	rpoS	1062564..1063556 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ51_RS05500 (CNQ51_05500)	ygbN	1063650..1065014 (-)	1365	WP_000104441.1	GntP family transporter	-
CNQ51_RS05505 (CNQ51_05505)	ygbM	1065103..1065879 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CNQ51_RS05510 (CNQ51_05510)	ygbL	1065884..1066522 (-)	639	WP_001278994.1	aldolase	-
CNQ51_RS05515 (CNQ51_05515)	otnK	1066519..1067781 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206539 CNQ51_RS05495 WP_000081550.1 1062564..1063556(+) (rpoS) [Escherichia coli strain 1283]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206539 CNQ51_RS05495 WP_000081550.1 1062564..1063556(+) (rpoS) [Escherichia coli strain 1283]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715