Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ51_RS00590 Genome accession   NZ_CP023371
Coordinates   115914..116582 (+) Length   222 a.a.
NCBI ID   WP_001336353.1    Uniprot ID   -
Organism   Escherichia coli strain 1283     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110914..121582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ51_RS00555 (CNQ51_00555) yicC 110934..111797 (-) 864 WP_000621340.1 YicC/YloC family endoribonuclease -
  CNQ51_RS00565 (CNQ51_00565) rph 111924..112640 (+) 717 WP_001247093.1 ribonuclease PH -
  CNQ51_RS00570 (CNQ51_00570) pyrE 112705..113346 (+) 642 WP_000806177.1 orotate phosphoribosyltransferase -
  CNQ51_RS00575 (CNQ51_00575) slmA 113383..113979 (-) 597 WP_000818601.1 nucleoid occlusion factor SlmA -
  CNQ51_RS00580 (CNQ51_00580) dut 114086..114544 (-) 459 WP_000976070.1 dUTP diphosphatase -
  CNQ51_RS00585 (CNQ51_00585) coaBC 114522..115742 (-) 1221 WP_000050139.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  CNQ51_RS00590 (CNQ51_00590) radC 115914..116582 (+) 669 WP_001336353.1 DNA repair protein RadC Machinery gene
  CNQ51_RS00595 (CNQ51_00595) rpmB 116799..117035 (+) 237 WP_000091955.1 50S ribosomal protein L28 -
  CNQ51_RS00600 (CNQ51_00600) rpmG 117056..117223 (+) 168 WP_001051798.1 50S ribosomal protein L33 -
  CNQ51_RS00605 (CNQ51_00605) mutM 117321..118130 (+) 810 WP_001114529.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  CNQ51_RS00610 (CNQ51_00610) coaD 118169..118648 (-) 480 WP_001171873.1 pantetheine-phosphate adenylyltransferase -
  CNQ51_RS00615 (CNQ51_00615) waaA 118656..119933 (-) 1278 WP_000891566.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  CNQ51_RS00620 (CNQ51_00620) rfaQ 120340..121410 (+) 1071 WP_001311221.1 lipopolysaccharide core heptosyltransferase RfaQ -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25290.41 Da        Isoelectric Point: 7.8777

>NTDB_id=206523 CNQ51_RS00590 WP_001336353.1 115914..116582(+) (radC) [Escherichia coli strain 1283]
MKNNSQLLMPREKMLKFGISALTDVELLALFLRTGTRGKDVLTLAKEMLENFGSLYGLLTSEYEQFSGVHGIGVAKFAQL
KGIAELARRYYNVRMREESPLLSPEMTREFLQSQLTGEEREIFMVIFLDSQHRVITHCRLFSGTLNHVEVHPREIIREAI
KINASALILAHNHPSGCAEPSKADKLITERIIKSCQFMDLRVLDHIVIGRGEYVSFAERGWI

Nucleotide


Download         Length: 669 bp        

>NTDB_id=206523 CNQ51_RS00590 WP_001336353.1 115914..116582(+) (radC) [Escherichia coli strain 1283]
GTGAAAAACAATTCACAGCTGTTGATGCCGCGCGAAAAAATGCTGAAGTTTGGTATTAGCGCCTTAACGGATGTCGAGCT
GCTGGCGCTATTTCTGCGTACCGGAACGCGCGGTAAAGATGTATTAACCCTGGCAAAAGAGATGCTGGAGAATTTCGGCT
CTCTTTATGGCTTGTTAACCTCTGAATATGAACAATTTAGTGGCGTTCATGGAATTGGCGTGGCGAAATTTGCCCAGTTA
AAGGGGATTGCTGAACTGGCGCGGCGTTACTACAACGTGCGGATGCGTGAAGAAAGCCCTTTACTCAGCCCGGAGATGAC
GCGGGAATTTTTACAAAGCCAGCTCACGGGTGAGGAGCGGGAGATCTTTATGGTGATCTTTCTCGACTCACAACACCGGG
TTATAACGCATTGCCGTCTTTTTTCCGGCACGCTAAACCATGTTGAAGTCCATCCTCGGGAAATTATCCGCGAAGCGATA
AAAATAAACGCCTCGGCGCTGATCCTTGCACATAATCACCCTTCGGGTTGTGCTGAACCCAGTAAAGCGGATAAACTCAT
TACTGAACGGATAATAAAGAGTTGTCAGTTCATGGATTTACGCGTGCTCGACCATATCGTGATTGGGCGTGGAGAGTATG
TTTCTTTTGCCGAACGCGGTTGGATTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(9-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.55

100

0.496

Multiple sequence alignment