Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SMA_0747 Genome accession   HE613569
Coordinates   748883..751090 (+) Length   735 a.a.
NCBI ID   CCF02038.1    Uniprot ID   -
Organism   Streptococcus macedonicus ACA-DC 198     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 743883..756090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMA_0742 miaA 744222..745109 (+) 888 CCF02033.1 tRNA delta(2)-isopentenylpyrophosphate transferase -
  SMA_0743 ynbA 745248..746486 (+) 1239 CCF02034.1 GTP-binding protein YnbA -
  SMA_0744 - 746479..747117 (+) 639 CCF02035.1 Cystathionine beta-lyase -
  SMA_0745 rnz 747157..748086 (+) 930 CCF02036.1 Ribonuclease Z -
  SMA_0746 - 748083..748841 (+) 759 CCF02037.1 Short chain dehydrogenase -
  SMA_0747 recJ 748883..751090 (+) 2208 CCF02038.1 Single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SMA_0748 - 751237..751341 (+) 105 CCF02039.1 Hypothetical protein -
  SMA_0749 - 751652..751777 (+) 126 CCF02040.1 Hypothetical protein -
  SMA_0750 - 751868..752485 (-) 618 CCF02041.1 Hypothetical protein -
  SMA_0751 - 752350..752898 (-) 549 CCF02042.1 Hypothetical protein -
  SMA_0752 - 753024..753728 (-) 705 CCF02043.1 Hypothetical protein -
  SMA_0753 cbh 754003..754982 (+) 980 Protein_752 Choloylglycine hydrolase -
  SMA_0754 - 754999..755526 (+) 528 CCF02045.1 Hypothetical protein -

Sequence

Protein


Download         Length: 735 a.a.        Molecular weight: 82504.15 Da        Isoelectric Point: 4.3607

>NTDB_id=20648 SMA_0747 CCF02038.1 748883..751090(+) (recJ) [Streptococcus macedonicus ACA-DC 198]
MITSKYNWKNIEKEPDNGFFELTKKEKLTELASQILYSRGVDTAEKMNQFLSTDLSQLHDPYLLHDMDKAVVRIRQAIEN
YEQILVYGDYDADGMTSASIMKEALEMLGAEAQVYLPNRFTDGYGPNESVYKYFIEQQNVSLIITVDNGVAGHEAIAYAQ
SQGVDVIVTDHHSLPVELPEAFAIVHPEHPKADYPFKYLAGCGVAFKVACALLESIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKQTERIGLIELMKVSDVDMADVNEETVGFKIAPQLNALGRLDDPNPAVELLTGFDDEEAHNIAKMINAKN
EERKEIVQKIFDEAMSMVDLEKPVQVLAKEGWHPGVLGIVAGRISEQIAQPVIVLNIEDGLAKGSARSIETINIFHALDE
HRDLFEAFGGHAGAAGMTLVTENLDKLLQVLCDYIAENDIDLSQKKELVIDEVLELSEIDLDTVQSLEKLAPFGMDNPKP
VFEIKDFVVKQARTMGQNGAHLKLKIAQGTTAIDLVAFNQGHLAQEFQQAQNLCLATTLSINKWNGQMTVQLMLEDAHVE
GVQLIDIRSKTASLPERVPVLAEDSTANEVVVLDIPDKAEELKSLFVGRHFEAVYFKNHIKRAYYLTGYGTRDQFAKLYK
TIYQFPEFDVRYKLKDLSQYLNIPDILLIKMIQIFDELDFVTITDGVMVVNKDAQKRSISESQIYQDLKQQVEFQELMAL
GTPQEIYDWLTDEDD

Nucleotide


Download         Length: 2208 bp        

>NTDB_id=20648 SMA_0747 CCF02038.1 748883..751090(+) (recJ) [Streptococcus macedonicus ACA-DC 198]
ATGATAACAAGTAAATACAATTGGAAAAATATTGAAAAAGAGCCAGATAATGGCTTTTTTGAACTGACAAAAAAAGAAAA
GCTAACAGAATTAGCTAGTCAGATTCTTTATAGCCGAGGTGTTGATACGGCAGAAAAAATGAATCAATTTTTATCAACGG
ATTTGTCACAATTGCATGATCCTTACCTTTTACATGACATGGATAAAGCGGTTGTGCGTATTCGCCAAGCCATTGAGAAC
TACGAGCAAATTTTGGTTTATGGTGATTATGATGCTGACGGAATGACTAGTGCCAGTATTATGAAAGAAGCCCTTGAAAT
GTTAGGCGCTGAAGCTCAAGTTTATCTGCCAAATCGTTTCACAGACGGATACGGTCCCAATGAATCGGTCTATAAATATT
TCATTGAGCAGCAAAACGTTTCTTTGATTATCACGGTGGACAATGGCGTAGCAGGGCACGAAGCGATTGCCTACGCACAA
AGTCAGGGGGTAGATGTTATTGTGACAGACCACCACAGTTTGCCAGTAGAGCTACCAGAAGCATTTGCGATTGTGCACCC
AGAACACCCAAAAGCTGATTATCCGTTCAAATATCTGGCTGGCTGTGGCGTTGCTTTCAAAGTCGCTTGTGCTTTGCTAG
AATCTATTCCGACAGAAATGCTTGATCTGGTGGCAATTGGAACAATTGCTGATATGGTGAGTTTGACTGATGAAAACCGT
ATTATGGTTAAAGTCGGACTTGAAATTCTGAAACAAACCGAACGCATTGGTCTGATTGAATTGATGAAAGTCTCAGACGT
GGATATGGCAGATGTCAATGAAGAAACGGTTGGTTTCAAAATTGCTCCGCAGCTAAATGCACTTGGTCGCCTAGATGATC
CAAATCCTGCTGTCGAATTATTGACTGGCTTTGATGATGAAGAAGCGCATAACATTGCCAAGATGATTAATGCTAAAAAC
GAAGAACGCAAGGAAATTGTTCAGAAAATCTTCGATGAAGCCATGAGCATGGTTGATTTGGAAAAGCCAGTGCAAGTATT
GGCTAAAGAAGGCTGGCACCCAGGCGTTTTAGGAATTGTCGCAGGGCGTATTTCAGAACAAATCGCGCAGCCAGTGATTG
TTTTAAATATCGAAGATGGGCTTGCTAAAGGTTCAGCCAGAAGTATTGAGACCATTAATATTTTCCATGCTCTTGATGAG
CACCGTGACTTATTTGAAGCCTTTGGTGGACATGCTGGTGCTGCTGGAATGACCTTGGTGACTGAAAATCTTGATAAATT
ATTACAAGTTTTGTGTGATTATATTGCTGAAAATGATATTGACTTATCACAGAAAAAAGAGCTTGTTATTGATGAGGTTC
TGGAGCTATCAGAGATTGACCTTGATACCGTGCAAAGTCTTGAAAAATTGGCACCATTTGGCATGGACAATCCAAAACCA
GTTTTTGAAATTAAAGATTTTGTGGTGAAACAAGCACGCACTATGGGGCAAAATGGTGCGCATTTAAAATTAAAAATTGC
CCAAGGCACAACGGCAATTGATCTTGTTGCCTTTAATCAAGGACATCTGGCGCAGGAATTTCAACAAGCACAAAATCTTT
GCCTTGCAACGACCTTATCGATTAATAAGTGGAATGGTCAAATGACTGTACAATTAATGTTGGAAGATGCGCATGTTGAG
GGTGTTCAGTTGATTGATATTCGCTCCAAAACGGCTAGCCTTCCAGAACGTGTTCCAGTATTGGCTGAAGACAGCACGGC
AAATGAAGTTGTGGTGTTAGACATTCCTGATAAGGCTGAAGAATTGAAATCACTCTTTGTCGGTCGTCATTTTGAAGCCG
TTTATTTTAAAAATCATATTAAACGTGCTTATTATCTGACAGGCTATGGCACGCGTGACCAATTTGCTAAGCTTTATAAA
ACTATTTATCAATTCCCAGAATTTGATGTCCGCTACAAGTTGAAAGATTTGAGTCAATACCTTAACATCCCTGATATTTT
GCTCATTAAAATGATTCAGATTTTTGATGAATTAGATTTTGTAACTATCACAGATGGTGTTATGGTCGTCAACAAAGATG
CCCAGAAACGTAGTATTTCAGAAAGCCAAATCTACCAAGACCTCAAACAACAAGTTGAATTTCAAGAGCTAATGGCACTC
GGAACCCCACAAGAAATTTACGATTGGCTGACTGATGAAGATGACTAA

Domains

Predicted by InterProScan.

DHH family (DHH)

(83-228)

RecJ OB domain (RecJ_OB)

(450-556)

DHHA1 domain (DHHA1)

(317-434)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-730)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

66.757

100

0.672
  recJ Bacillus subtilis subsp. subtilis str. 168

39.097

100

0.412

Multiple sequence alignment