Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ52_RS09495 Genome accession   NZ_CP023366
Coordinates   1931023..1931499 (-) Length   158 a.a.
NCBI ID   WP_023910200.1    Uniprot ID   -
Organism   Escherichia coli strain 1428     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926023..1936499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ52_RS09450 (CNQ52_09450) sbmC 1926515..1926988 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  CNQ52_RS09455 (CNQ52_09455) yeeA 1927186..1928244 (+) 1059 WP_001200891.1 FUSC family protein -
  CNQ52_RS09460 (CNQ52_09460) tmaR 1928416..1928745 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ52_RS09465 (CNQ52_09465) - 1928846..1929028 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CNQ52_RS09470 (CNQ52_09470) - 1929100..1929228 (+) 129 Protein_1763 transposase domain-containing protein -
  CNQ52_RS27700 - 1929517..1929597 (-) 81 Protein_1764 hypothetical protein -
  CNQ52_RS09475 (CNQ52_09475) yeeW 1929643..1929837 (-) 195 WP_000988600.1 DUF5983 family protein -
  CNQ52_RS09480 (CNQ52_09480) cbtA 1929834..1930208 (-) 375 WP_001563930.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CNQ52_RS09485 (CNQ52_09485) cbeA 1930297..1930665 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CNQ52_RS09490 (CNQ52_09490) yeeT 1930739..1930960 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CNQ52_RS09495 (CNQ52_09495) radC 1931023..1931499 (-) 477 WP_023910200.1 RadC family protein Machinery gene
  CNQ52_RS09500 (CNQ52_09500) - 1931515..1932000 (-) 486 WP_000214393.1 antirestriction protein -
  CNQ52_RS09505 (CNQ52_09505) - 1932091..1932909 (-) 819 WP_023910202.1 DUF932 domain-containing protein -
  CNQ52_RS09515 (CNQ52_09515) - 1933009..1933242 (-) 234 WP_001119729.1 DUF905 family protein -
  CNQ52_RS09520 (CNQ52_09520) - 1933321..1933776 (-) 456 WP_000581504.1 IrmA family protein -
  CNQ52_RS09525 (CNQ52_09525) - 1933852..1936368 (-) 2517 WP_001315618.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17716.35 Da        Isoelectric Point: 7.2020

>NTDB_id=206473 CNQ52_RS09495 WP_023910200.1 1931023..1931499(-) (radC) [Escherichia coli strain 1428]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLVHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206473 CNQ52_RS09495 WP_023910200.1 1931023..1931499(-) (radC) [Escherichia coli strain 1428]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGAGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGTGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386

Multiple sequence alignment