Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CNQ52_RS06130 Genome accession   NZ_CP023366
Coordinates   1220952..1221467 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain 1428     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1215952..1226467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ52_RS06085 (CNQ52_06085) csrA 1216809..1216994 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CNQ52_RS06115 (CNQ52_06115) yqaB 1218182..1218748 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CNQ52_RS06120 (CNQ52_06120) yqaA 1218745..1219173 (+) 429 WP_001287454.1 YqaA family protein -
  CNQ52_RS06125 (CNQ52_06125) gshA 1219246..1220802 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  CNQ52_RS06130 (CNQ52_06130) luxS 1220952..1221467 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  CNQ52_RS06135 (CNQ52_06135) emrB 1221531..1223069 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CNQ52_RS06140 (CNQ52_06140) emrA 1223086..1224258 (-) 1173 WP_022646013.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CNQ52_RS06145 (CNQ52_06145) emrR 1224385..1224915 (-) 531 WP_000378441.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CNQ52_RS06150 (CNQ52_06150) ygaH 1225006..1225341 (-) 336 WP_000119759.1 L-valine transporter subunit YgaH -
  CNQ52_RS06155 (CNQ52_06155) ygaZ 1225331..1226068 (-) 738 WP_096040701.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=206462 CNQ52_RS06130 WP_001130211.1 1220952..1221467(+) (luxS) [Escherichia coli strain 1428]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=206462 CNQ52_RS06130 WP_001130211.1 1220952..1221467(+) (luxS) [Escherichia coli strain 1428]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment