Detailed information NTG0206459

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CNQ52_RS05855
• Genome accession: NZ_CP023366
• Coordinates: 1170581..1171573 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 1428
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1165581..1176573

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CNQ52_RS05825 (CNQ52_05825)	ispD	1165642..1166352 (+)	711	WP_000246131.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CNQ52_RS05830 (CNQ52_05830)	ispF	1166352..1166831 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CNQ52_RS05835 (CNQ52_05835)	truD	1166828..1167877 (+)	1050	WP_022646031.1	tRNA pseudouridine(13) synthase TruD	-
CNQ52_RS05840 (CNQ52_05840)	surE	1167858..1168619 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CNQ52_RS05845 (CNQ52_05845)	pcm	1168613..1169239 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CNQ52_RS05850 (CNQ52_05850)	nlpD	1169424..1170518 (+)	1095	WP_306305266.1	murein hydrolase activator NlpD	-
CNQ52_RS05855 (CNQ52_05855)	rpoS	1170581..1171573 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CNQ52_RS05860 (CNQ52_05860)	-	1171694..1172101 (-)	408	WP_001208067.1	MarR family transcriptional regulator	-
CNQ52_RS05865 (CNQ52_05865)	-	1172248..1172842 (+)	595	Protein_1087	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CNQ52_RS05870 (CNQ52_05870)	-	1172842..1174269 (+)	1428	WP_000863202.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CNQ52_RS05875 (CNQ52_05875)	-	1174280..1174516 (+)	237	WP_000562980.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CNQ52_RS05880 (CNQ52_05880)	pphB	1174557..1175213 (-)	657	WP_022646027.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=206459 CNQ52_RS05855 WP_000081550.1 1170581..1171573(+) (rpoS) [Escherichia coli strain 1428]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=206459 CNQ52_RS05855 WP_000081550.1 1170581..1171573(+) (rpoS) [Escherichia coli strain 1428]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCTTTGCTGGATCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTACTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715