Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CNQ53_RS10840 Genome accession   NZ_CP023364
Coordinates   1994723..1995199 (-) Length   158 a.a.
NCBI ID   WP_012311619.1    Uniprot ID   -
Organism   Escherichia coli strain 144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989723..2000199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ53_RS10795 (CNQ53_10790) sbmC 1990216..1990689 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  CNQ53_RS10800 (CNQ53_10795) yeeA 1990887..1991945 (+) 1059 WP_001200888.1 FUSC family protein -
  CNQ53_RS10805 (CNQ53_10800) tmaR 1992117..1992446 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ53_RS10810 (CNQ53_10805) - 1992547..1992729 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  CNQ53_RS10815 (CNQ53_10810) - 1992783..1992929 (+) 147 Protein_1833 transposase domain-containing protein -
  CNQ53_RS27530 - 1993218..1993298 (-) 81 Protein_1834 hypothetical protein -
  CNQ53_RS10820 (CNQ53_10815) yeeW 1993344..1993538 (-) 195 WP_000988600.1 DUF5983 family protein -
  CNQ53_RS10825 (CNQ53_10820) - 1993600..1993908 (-) 309 Protein_1836 TA system toxin CbtA family protein -
  CNQ53_RS10830 (CNQ53_10825) cbeA 1993997..1994365 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CNQ53_RS10835 (CNQ53_10830) yeeT 1994439..1994660 (-) 222 WP_000692359.1 DUF987 domain-containing protein -
  CNQ53_RS10840 (CNQ53_10835) radC 1994723..1995199 (-) 477 WP_012311619.1 RadC family protein Machinery gene
  CNQ53_RS10845 (CNQ53_10840) - 1995215..1995694 (-) 480 WP_000860090.1 antirestriction protein -
  CNQ53_RS10850 (CNQ53_10845) - 1995776..1996597 (-) 822 WP_001234504.1 DUF932 domain-containing protein -
  CNQ53_RS10860 (CNQ53_10855) - 1996818..1997228 (-) 411 WP_000846713.1 hypothetical protein -
  CNQ53_RS10865 (CNQ53_10860) - 1997244..1997927 (-) 684 WP_000775500.1 hypothetical protein -
  CNQ53_RS10870 (CNQ53_10865) - 1998063..1999133 (-) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  CNQ53_RS10875 (CNQ53_10870) - 1999130..2000035 (-) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.31 Da        Isoelectric Point: 6.9180

>NTDB_id=206393 CNQ53_RS10840 WP_012311619.1 1994723..1995199(-) (radC) [Escherichia coli strain 144]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=206393 CNQ53_RS10840 WP_012311619.1 1994723..1995199(-) (radC) [Escherichia coli strain 144]
ATGCAACAACTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGCCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACTGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment