Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CNQ53_RS10785 Genome accession   NZ_CP023364
Coordinates   1987295..1988722 (-) Length   475 a.a.
NCBI ID   WP_000980560.1    Uniprot ID   -
Organism   Escherichia coli strain 144     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1982295..1993722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CNQ53_RS10760 (CNQ53_10755) yeeZ 1982350..1983174 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CNQ53_RS10765 (CNQ53_10760) yeeY 1983220..1984149 (+) 930 WP_000803366.1 LysR substrate-binding domain-containing protein -
  CNQ53_RS27525 yoeI 1984364..1984426 (+) 63 WP_010723108.1 membrane protein YoeI -
  CNQ53_RS10770 (CNQ53_10765) plaP 1984416..1985774 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CNQ53_RS10775 (CNQ53_10770) tsuA 1985953..1987011 (+) 1059 WP_000492349.1 thiosulfate utilization transporter TsuA/YeeE -
  CNQ53_RS10780 (CNQ53_10775) tsuB 1987025..1987252 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CNQ53_RS10785 (CNQ53_10780) sbcB 1987295..1988722 (-) 1428 WP_000980560.1 exodeoxyribonuclease I Machinery gene
  CNQ53_RS10790 (CNQ53_10785) dacD 1988931..1990097 (+) 1167 WP_001296209.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CNQ53_RS10795 (CNQ53_10790) sbmC 1990216..1990689 (+) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -
  CNQ53_RS10800 (CNQ53_10795) yeeA 1990887..1991945 (+) 1059 WP_001200888.1 FUSC family protein -
  CNQ53_RS10805 (CNQ53_10800) tmaR 1992117..1992446 (+) 330 WP_000450409.1 DUF496 family protein -
  CNQ53_RS10810 (CNQ53_10805) - 1992547..1992729 (-) 183 WP_001016346.1 EutP/PduV family microcompartment system protein -
  CNQ53_RS10815 (CNQ53_10810) - 1992783..1992929 (+) 147 Protein_1833 transposase domain-containing protein -
  CNQ53_RS27530 - 1993218..1993298 (-) 81 Protein_1834 hypothetical protein -
  CNQ53_RS10820 (CNQ53_10815) yeeW 1993344..1993538 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54392.67 Da        Isoelectric Point: 5.3498

>NTDB_id=206392 CNQ53_RS10785 WP_000980560.1 1987295..1988722(-) (sbcB) [Escherichia coli strain 144]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
ERLGIARQHCLDNLKVLRENPQVRDKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDDNEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQLYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=206392 CNQ53_RS10785 WP_000980560.1 1987295..1988722(-) (sbcB) [Escherichia coli strain 144]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCACCATTACTGGAGCTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGACGCT
GAGCGTTTAGGGATTGCTCGTCAACACTGCCTGGATAACCTGAAAGTGTTGCGCGAAAACCCGCAAGTACGCGACAAAGT
TGTGGCAATTTTTGCAGAAGCTGAACCGTTTACACCATCAGATAATGTAGATGCACAGCTTTATAATGGCTTTTTTAGCG
ACGCCGATCGTGCAGCAATGAAAATCGTGCTGGAGACTGAACCGCGTAATTTACCGGCTCTGGATATCACCTTTGTTGAT
AAGCGTATCGAGAAACTCCTGTTCAACTACCGCGCCCGCAACTTCCCCGGCACGTTAGATGACAACGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCTGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment